Magnesium in PDB 6wsg: Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex

All present enzymatic activity of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex:
3.4.21.92;

The binding sites of Magnesium atom in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex (pdb code 6wsg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex, PDB code: 6wsg:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:30.0 occ:1.00 HG1 B:THR126 1.6 54.9 1.0 O2G B:AGS501 2.0 52.0 1.0 OG1 B:THR126 2.0 54.9 1.0 O2B B:AGS501 2.5 52.0 1.0 OD2 B:ASP184 2.7 56.1 1.0 HZ1 C:LYS213 2.9 50.8 1.0 OD1 B:ASP184 3.1 56.1 1.0 CG B:ASP184 3.2 56.1 1.0 CB B:THR126 3.4 54.9 1.0 PG B:AGS501 3.4 52.0 1.0 HZ2 C:LYS213 3.5 50.8 1.0 H B:THR126 3.6 54.9 1.0 NZ C:LYS213 3.6 50.8 1.0 HB B:THR126 3.7 54.9 1.0 PB B:AGS501 3.8 52.0 1.0 HE2 B:LYS125 3.9 48.9 1.0 HG21 B:THR126 3.9 54.9 1.0 OE2 B:GLU185 4.0 55.0 1.0 O1A B:AGS501 4.0 52.0 1.0 HB2 B:LYS125 4.1 48.9 1.0 HZ3 C:LYS213 4.1 50.8 1.0 S1G B:AGS501 4.1 52.0 1.0 CG2 B:THR126 4.1 54.9 1.0 O3B B:AGS501 4.1 52.0 1.0 N B:THR126 4.2 54.9 1.0 HH B:TYR182 4.2 59.3 1.0 HG23 B:THR126 4.2 54.9 1.0 CA B:THR126 4.3 54.9 1.0 O1B B:AGS501 4.5 52.0 1.0 HH22 C:ARG307 4.5 43.9 1.0 O3G B:AGS501 4.5 52.0 1.0 HA B:THR126 4.5 54.9 1.0 HE3 C:LYS213 4.6 50.8 1.0 CB B:ASP184 4.6 56.1 1.0 HH21 C:ARG307 4.7 43.9 1.0 CD B:GLU185 4.7 55.0 1.0 HB3 B:ASP184 4.7 56.1 1.0 CE C:LYS213 4.7 50.8 1.0 OH B:TYR182 4.8 59.3 1.0 CE B:LYS125 4.8 48.9 1.0 OE1 C:GLU216 4.8 48.1 1.0 NH2 C:ARG307 4.9 43.9 1.0 PA B:AGS501 4.9 52.0 1.0 O3A B:AGS501 4.9 52.0 1.0 H B:GLU185 4.9 55.0 1.0 HE2 B:TYR182 4.9 59.3 1.0 HE3 B:LYS125 5.0 48.9 1.0 CB B:LYS125 5.0 48.9 1.0

Magnesium binding site 2 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:30.0 occ:1.00 HG1 C:THR126 1.6 38.4 1.0 O2G C:AGS501 2.0 38.5 1.0 OG1 C:THR126 2.1 38.4 1.0 O2B C:AGS501 2.5 38.5 1.0 OD2 C:ASP184 2.5 40.9 1.0 CB C:THR126 3.2 38.4 1.0 HB C:THR126 3.3 38.4 1.0 PG C:AGS501 3.4 38.5 1.0 CG C:ASP184 3.4 40.9 1.0 HG21 C:THR126 3.6 38.4 1.0 OD1 C:ASP184 3.6 40.9 1.0 O3G C:AGS501 3.7 38.5 1.0 OE2 C:GLU185 3.8 42.1 1.0 PB C:AGS501 3.9 38.5 1.0 H C:THR126 3.9 38.4 1.0 CG2 C:THR126 4.0 38.4 1.0 OE1 D:GLU216 4.0 41.5 1.0 HD3 D:LYS213 4.1 42.4 1.0 HH21 D:ARG307 4.1 36.2 1.0 HH22 D:ARG307 4.1 36.2 1.0 O3B C:AGS501 4.1 38.5 1.0 O1A C:AGS501 4.2 38.5 1.0 HZ3 D:LYS213 4.3 42.4 1.0 NH2 D:ARG307 4.4 36.2 1.0 CA C:THR126 4.4 38.4 1.0 N C:THR126 4.5 38.4 1.0 HZ2 D:LYS213 4.6 42.4 1.0 HG23 C:THR126 4.6 38.4 1.0 HD2 D:LYS213 4.6 42.4 1.0 HA C:THR126 4.6 38.4 1.0 HG22 C:THR126 4.6 38.4 1.0 CD C:GLU185 4.7 42.1 1.0 HB2 C:LYS125 4.7 35.6 1.0 OE2 D:GLU216 4.7 41.5 1.0 CB C:ASP184 4.7 40.9 1.0 O1B C:AGS501 4.7 38.5 1.0 HE2 C:LYS125 4.8 35.6 1.0 CD D:GLU216 4.8 41.5 1.0 O3A C:AGS501 4.8 38.5 1.0 CD D:LYS213 4.8 42.4 1.0 HB3 C:ASP184 4.8 40.9 1.0 S1G C:AGS501 4.8 38.5 1.0 OH C:TYR182 4.9 39.3 1.0 NZ D:LYS213 4.9 42.4 1.0 HH22 C:ARG370 4.9 40.9 1.0 HG2 C:GLU185 5.0 42.1 1.0

Magnesium binding site 3 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:30.0 occ:1.00 HG1 D:THR126 1.6 44.5 1.0 O3G D:AGS501 2.0 59.6 1.0 OG1 D:THR126 2.0 44.5 1.0 O2B D:AGS501 2.2 59.6 1.0 OD2 D:ASP184 2.7 38.9 1.0 OD1 D:ASP184 3.2 38.9 1.0 CG D:ASP184 3.3 38.9 1.0 CB D:THR126 3.4 44.5 1.0 PG D:AGS501 3.5 59.6 1.0 PB D:AGS501 3.6 59.6 1.0 HB D:THR126 3.7 44.5 1.0 H D:THR126 3.7 44.5 1.0 HG21 D:THR126 3.8 44.5 1.0 OE2 D:GLU185 3.9 40.7 1.0 HE2 D:LYS125 4.0 43.1 1.0 O3B D:AGS501 4.1 59.6 1.0 CG2 D:THR126 4.1 44.5 1.0 HB2 D:LYS125 4.2 43.1 1.0 N D:THR126 4.2 44.5 1.0 O1A D:AGS501 4.3 59.6 1.0 OE1 E:GLU216 4.3 44.3 1.0 O1B D:AGS501 4.3 59.6 1.0 CA D:THR126 4.3 44.5 1.0 HG23 D:THR126 4.4 44.5 1.0 HH22 E:ARG307 4.4 43.3 1.0 O2G D:AGS501 4.4 59.6 1.0 S1G D:AGS501 4.5 59.6 1.0 CD D:GLU185 4.5 40.7 1.0 HA D:THR126 4.5 44.5 1.0 HH21 E:ARG307 4.6 43.3 1.0 O3A D:AGS501 4.7 59.6 1.0 OH D:TYR182 4.7 36.1 1.0 HH12 D:ARG370 4.7 44.8 1.0 NH2 E:ARG307 4.8 43.3 1.0 CB D:ASP184 4.8 38.9 1.0 OE2 E:GLU216 4.8 44.3 1.0 H D:GLU185 4.8 40.7 1.0 HG2 D:GLU185 4.8 40.7 1.0 PA D:AGS501 4.9 59.6 1.0 HG22 D:THR126 4.9 44.5 1.0 OE1 D:GLU185 4.9 40.7 1.0 HB3 D:ASP184 4.9 38.9 1.0 HH D:TYR182 5.0 36.1 1.0 CE D:LYS125 5.0 43.1 1.0 CD E:GLU216 5.0 44.3 1.0

Magnesium binding site 4 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:30.0 occ:1.00 HG1 E:THR126 1.6 40.5 1.0 O2G E:AGS501 2.0 46.4 1.0 OG1 E:THR126 2.0 40.5 1.0 O2B E:AGS501 2.1 46.4 1.0 OD2 E:ASP184 3.0 42.8 1.0 CB E:THR126 3.2 40.5 1.0 HB E:THR126 3.2 40.5 1.0 PG E:AGS501 3.5 46.4 1.0 H E:THR126 3.6 40.5 1.0 PB E:AGS501 3.6 46.4 1.0 HG21 E:THR126 3.8 40.5 1.0 CG E:ASP184 3.8 42.8 1.0 OD1 E:ASP184 3.9 42.8 1.0 O1A E:AGS501 3.9 46.4 1.0 OE1 F:GLU216 3.9 49.2 1.0 O3G E:AGS501 4.0 46.4 1.0 O3B E:AGS501 4.1 46.4 1.0 HH22 F:ARG307 4.1 47.2 1.0 CG2 E:THR126 4.1 40.5 1.0 N E:THR126 4.2 40.5 1.0 CA E:THR126 4.2 40.5 1.0 OE2 E:GLU185 4.4 45.3 1.0 HB2 E:LYS125 4.4 38.6 1.0 O1B E:AGS501 4.4 46.4 1.0 HH21 F:ARG307 4.4 47.2 1.0 HE2 F:LYS213 4.5 47.9 1.0 HH21 E:ARG370 4.5 46.2 1.0 NH2 F:ARG307 4.5 47.2 1.0 OE2 F:GLU216 4.5 49.2 1.0 O3A E:AGS501 4.5 46.4 1.0 HE2 E:LYS125 4.5 38.6 1.0 HA E:THR126 4.5 40.5 1.0 HH22 E:ARG370 4.5 46.2 1.0 CD F:GLU216 4.7 49.2 1.0 PA E:AGS501 4.7 46.4 1.0 HG23 E:THR126 4.7 40.5 1.0 HG22 E:THR126 4.7 40.5 1.0 S1G E:AGS501 4.8 46.4 1.0 NH2 E:ARG370 4.9 46.2 1.0 OH E:TYR182 5.0 44.0 1.0

X.Fei, T.A.Bell, S.R.Barkow, T.A.Baker, R.T.Sauer. Structural Basis of Clpxp Recognition and Unfolding of Ssra-Tagged Substrates. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33089779
DOI: 10.7554/ELIFE.61496