Atomistry » Magnesium » PDB 6x4j-6xg6 » 6x5k
Atomistry »
  Magnesium »
    PDB 6x4j-6xg6 »
      6x5k »

Magnesium in PDB 6x5k: Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster

Enzymatic activity of Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster

All present enzymatic activity of Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster:
1.2.7.4; 2.3.1.169;

Protein crystallography data

The structure of Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster, PDB code: 6x5k was solved by S.E.Cohen, E.C.Wittenborn, R.Hendrickson, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.63 / 2.47
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 99.729, 137.383, 141.867, 101.82, 109.08, 103.66
R / Rfree (%) 20.3 / 23.4

Other elements in 6x5k:

The structure of Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster also contains other interesting chemical elements:

Nickel (Ni) 12 atoms
Iron (Fe) 56 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster (pdb code 6x5k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster, PDB code: 6x5k:

Magnesium binding site 1 out of 1 in 6x5k

Go back to Magnesium Binding Sites List in 6x5k
Magnesium binding site 1 out of 1 in the Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Mg805

b:43.8
occ:1.00
 O N:LEU417 2.3 44.8 1.0
O N:ASN412 2.4 38.0 1.0
O N:PHE328 2.5 38.0 1.0
O N:HOH962 2.5 34.8 1.0
O N:GLY414 2.6 41.8 1.0
OE1 N:GLU331 2.8 52.5 1.0
C N:ASN412 3.3 38.4 1.0
C N:LEU417 3.5 42.7 1.0
C N:PHE328 3.5 41.1 1.0
CA N:ASN412 3.7 40.5 1.0
C N:GLY414 3.7 38.1 1.0
CB N:GLU331 3.8 54.1 1.0
CB N:PHE328 3.9 35.7 1.0
CD N:GLU331 3.9 54.0 1.0
N N:LEU417 4.0 38.5 1.0
CA N:LEU417 4.3 36.7 1.0
N N:GLY414 4.3 37.6 1.0
CA N:PHE328 4.3 40.8 1.0
CB N:ASN412 4.4 38.6 1.0
CG N:GLU331 4.4 53.2 1.0
N N:GLY416 4.4 33.3 1.0
N N:GLU329 4.4 43.3 1.0
N N:TYR413 4.5 36.2 1.0
N N:TRP418 4.5 41.5 1.0
OD1 N:ASN412 4.5 35.0 1.0
O N:ILE411 4.6 45.6 1.0
CA N:GLU329 4.6 46.6 1.0
N N:GLU415 4.6 36.2 1.0
CA N:GLY414 4.6 37.6 1.0
CA N:GLU415 4.6 36.0 1.0
C N:TYR413 4.6 38.4 1.0
CA N:TRP418 4.7 39.8 1.0
O N:GLU329 4.7 49.9 1.0
CB N:LEU417 4.7 30.8 1.0
C N:GLU329 4.9 47.1 1.0
OE2 N:GLU331 4.9 56.1 1.0
C N:GLY416 4.9 39.0 1.0
N N:GLU331 4.9 53.2 1.0
CA N:TYR413 4.9 35.5 1.0
CA N:GLU331 4.9 53.4 1.0
CG N:ASN412 4.9 36.4 1.0
C N:GLU415 4.9 34.2 1.0
N N:ASN412 4.9 43.1 1.0

Reference:

S.E.Cohen, M.Can, E.C.Wittenborn, R.A.Hendrickson, S.W.Ragsdale, C.L.Drennan. Crystallographic Characterization of the Carbonylated A-Cluster in Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase Acs Catalysis V. 10 9741 2020.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.0C03033
Page generated: Tue Oct 1 23:26:36 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy