Magnesium in PDB 6xmu: Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound

The structure of Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound (pdb code 6xmu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound, PDB code: 6xmu:

Magnesium binding site 1 out of 1 in the Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of P5A-Atpase SPF1, Endogenous Substrate-Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1302 b:23.0 occ:1.00 F1 A:BEF1301 2.0 26.5 1.0 OD2 A:ASP487 2.2 24.6 1.0 O A:THR489 2.3 23.5 1.0 OD1 A:ASP816 2.4 20.4 1.0 CG A:ASP487 3.3 24.6 1.0 BE A:BEF1301 3.4 26.5 1.0 C A:THR489 3.5 23.5 1.0 CG A:ASP816 3.6 20.4 1.0 N A:GLY817 3.7 20.6 1.0 OD1 A:ASP487 3.7 24.6 1.0 CA A:GLY817 4.1 20.6 1.0 OD2 A:ASP816 4.1 20.4 1.0 F2 A:BEF1301 4.2 26.5 1.0 N A:ASP816 4.4 20.4 1.0 N A:GLY490 4.4 23.0 1.0 CA A:GLY490 4.4 23.0 1.0 F3 A:BEF1301 4.4 26.5 1.0 CA A:THR489 4.5 23.5 1.0 C A:ASP816 4.5 20.4 1.0 CB A:ASP487 4.5 24.6 1.0 O A:ALA305 4.6 25.7 1.0 CB A:THR489 4.6 23.5 1.0 N A:THR489 4.6 23.5 1.0 OG1 A:THR491 4.8 21.5 1.0 CB A:ASP816 4.8 20.4 1.0 CA A:ASP816 4.8 20.4 1.0 OD2 A:ASP820 4.9 23.5 1.0 N A:THR491 4.9 21.5 1.0 OD1 A:ASN819 4.9 23.5 1.0 C A:GLY490 4.9 23.0 1.0

M.J.Mckenna, S.I.Sim, A.Ordureau, L.Wei, J.W.Harper, S.Shao, E.Park. The Endoplasmic Reticulum P5A-Atpase Is A Transmembrane Helix Dislocase. Science V. 369 2020.
ISSN: ESSN 1095-9203
PubMed: 32973005
DOI: 10.1126/SCIENCE.ABC5809