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Magnesium in PDB 6ykn: Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B
Enzymatic activity of Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B
All present enzymatic activity of Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B:
6.1.1.4;
6.1.1.4;
Protein crystallography data
The structure of Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B, PDB code: 6ykn
was solved by
L.Pang,
S.V.Strelkov,
S.D.Weeks,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 76.88 / 2.63 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 49.004, 81.749, 226.099, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 19.8 / 25.4 |
Other elements in 6ykn:
The structure of Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B also contains other interesting chemical elements:
| Zinc | (Zn) | 1 atom |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B
(pdb code 6ykn). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B, PDB code: 6ykn:
In total only one binding site of Magnesium was determined in the Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B, PDB code: 6ykn:
Magnesium binding site 1 out of 1 in 6ykn
Go back to
Magnesium Binding Sites List in 6ykn
Magnesium binding site 1 out
of 1 in the Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11B within 5.0Å range:
|
Reference:
D.De Ruysscher,
L.Pang,
S.M.G.Lenders,
D.Cappoen,
P.Cos,
J.Rozenski,
S.V.Strelkov,
S.D.Weeks,
A.Van Aerschot.
Synthesis and Structure-Activity Studies of Novel Anhydrohexitol-Based Leucyl-Trna Synthetase Inhibitors. Eur.J.Med.Chem. 13021 2020.
ISSN: ISSN 0223-5234
PubMed: 33248851
DOI: 10.1016/J.EJMECH.2020.113021
Page generated: Wed Aug 13 20:56:13 2025
ISSN: ISSN 0223-5234
PubMed: 33248851
DOI: 10.1016/J.EJMECH.2020.113021
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