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Magnesium in PDB 6z11: Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering

Enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering

All present enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering:
2.7.7.6; 3.6.4.12;

Other elements in 6z11:

The structure of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering (pdb code 6z11). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering, PDB code: 6z11:

Magnesium binding site 1 out of 1 in 6z11

Go back to Magnesium Binding Sites List in 6z11
Magnesium binding site 1 out of 1 in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2003

b:11.8
occ:1.00
OD2 H:ASP483 1.9 18.9 1.0
OD1 H:ASP483 2.3 18.9 1.0
OD1 D:ASP537 2.3 12.1 1.0
CG H:ASP483 2.3 18.9 1.0
OD1 D:ASP535 2.5 10.5 1.0
OD1 D:ASP539 2.9 12.5 1.0
OD2 D:ASP537 2.9 12.1 1.0
CG D:ASP537 2.9 12.1 1.0
OD2 D:ASP539 3.2 12.5 1.0
CG D:ASP535 3.3 10.5 1.0
OD2 D:ASP535 3.3 10.5 1.0
CG D:ASP539 3.4 12.5 1.0
CB H:ASP483 3.8 18.9 1.0
N H:ASP483 4.3 18.9 1.0
CB D:ASP537 4.4 12.1 1.0
O D:ASP537 4.4 12.1 1.0
O D:ASP535 4.4 10.5 1.0
CA H:ASP483 4.6 18.9 1.0
NH2 D:ARG500 4.7 14.3 1.0
CB D:ASP535 4.8 10.5 1.0
CB D:ASP539 4.9 12.5 1.0
C D:ASP537 4.9 12.1 1.0

Reference:

T.Kouba, T.Koval, J.Dohnalek, L.Krasny. Held, A Helicase-Like Protein From Gram-Positive Bacteria in Complex with Rna Polymerase To Be Published.
Page generated: Wed Aug 13 21:51:59 2025

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