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Magnesium in PDB 6z9z: Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity

Enzymatic activity of Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity

All present enzymatic activity of Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity:
2.4.2.3;

Protein crystallography data

The structure of Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity, PDB code: 6z9z was solved by P.A.Eistrikh-Heller, S.V.Rubinsky, V.R.Samygina, A.G.Gabdulkhakov, A.A.Lashkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.61 / 1.04
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 93.186, 97.061, 93.227, 90, 119.97, 90
R / Rfree (%) 12.6 / 14.2

Other elements in 6z9z:

The structure of Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity also contains other interesting chemical elements:

Sodium (Na) 11 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity (pdb code 6z9z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity, PDB code: 6z9z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6z9z

Go back to Magnesium Binding Sites List in 6z9z
Magnesium binding site 1 out of 2 in the Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg305

b:15.3
occ:0.67
 O D:HOH454 2.1 22.2 1.0
O D:HOH519 2.1 23.3 1.0
O D:PHE171 4.0 11.8 1.0
O D:HOH472 4.1 29.6 1.0
O D:THR170 4.3 10.8 1.0
O C:HOH686 4.5 41.4 1.0
O D:HOH599 4.7 29.0 1.0
O D:HOH535 4.8 22.9 1.0
HA D:PHE171 4.9 12.8 1.0
C D:PHE171 4.9 10.2 1.0

Magnesium binding site 2 out of 2 in 6z9z

Go back to Magnesium Binding Sites List in 6z9z
Magnesium binding site 2 out of 2 in the Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Resolution X-Ray Structure of the Uridine Phosphorylase From Vibrio Cholerae on Crystals Grown Under Microgravity within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg306

b:16.1
occ:0.60
 O E:HOH445 2.2 24.2 1.0
O E:HOH506 2.2 23.0 1.0
O E:PHE171 4.0 11.1 1.0
O E:HOH531 4.0 26.0 1.0
O E:THR170 4.2 10.9 1.0
O F:HOH632 4.6 40.7 1.0
O E:HOH592 4.6 31.0 1.0
O E:HOH533 4.7 22.9 1.0
HA E:PHE171 4.8 12.2 1.0
C E:PHE171 4.9 10.0 1.0
O F:HOH650 5.0 50.5 1.0

Reference:

P.A.Eistrikh-Heller, S.V.Rubinsky, V.R.Samygina, A.G.Gabdulkhakov, A.S.Mironov, A.A.Lashkov. Crystallization Under Microgravity Conditions and Atomic Resolution X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae To Be Published.
Page generated: Wed Oct 2 02:14:09 2024

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