Magnesium in PDB 6zec: Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody

The structure of Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody, PDB code: 6zec was solved by J.D.Allen, Y.Watanabe, M.Crispin, T.A.Bowden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.61 / 1.65
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	91.33, 60.79, 84.17, 90, 90, 90
R / Rfree (%)	17.5 / 20.6

The binding sites of Magnesium atom in the Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody (pdb code 6zec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody, PDB code: 6zec:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg304 b:31.1 occ:1.00 O H:HOH606 2.9 48.7 1.0 O H:HOH532 3.0 32.7 1.0 NH1 H:ARG82A 3.3 23.0 1.0 CD H:ARG82A 3.5 22.8 1.0 CG H:ARG82A 3.5 22.4 1.0 CD H:LYS81 3.9 32.1 1.0 CB H:LYS81 4.0 24.5 1.0 CZ H:ARG82A 4.3 23.0 1.0 CG2 H:THR17 4.3 21.9 1.0 NE H:ARG82A 4.3 22.7 1.0 OG1 H:THR68 4.5 21.2 1.0 CG H:LYS81 4.5 28.5 1.0 CB H:THR68 4.7 20.8 1.0 O H:HOH451 4.8 32.5 1.0 OG1 H:THR17 5.0 23.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg305 b:40.3 occ:1.00 OG H:SER156 2.9 36.6 1.0 ND2 H:ASN197 3.2 28.4 1.0 N H:SER156 3.5 35.8 1.0 CA H:ASN155 3.6 34.1 1.0 C H:ASN155 3.7 35.6 1.0 CB H:ILE195 3.9 31.6 1.0 CG2 H:ILE195 3.9 31.8 1.0 CD1 H:ILE195 4.0 34.5 1.0 CB H:SER156 4.1 36.4 1.0 CG H:ASN197 4.1 28.6 1.0 OD1 H:ASN197 4.1 29.9 1.0 N H:ASN155 4.2 31.5 1.0 CA H:SER156 4.3 35.9 1.0 O H:HOH517 4.4 50.4 1.0 CG1 H:ILE195 4.5 33.2 1.0 O H:ASN155 4.6 35.7 1.0 O H:ILE195 4.7 28.5 1.0 OD1 H:ASN155 4.8 35.1 1.0 CB H:ASN155 4.9 34.5 1.0 O H:HOH580 4.9 50.1 1.0

J.D.Allen, Y.Watanabe, M.Crispin, T.A.Bowden. Crystal Structure of the Fab Fragment of A Glycosylated Lymphoma Antibody To Be Published.