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Magnesium in PDB 6zpo: Bovine Atp Synthase Monomer State 1 (Combined)

Enzymatic activity of Bovine Atp Synthase Monomer State 1 (Combined)

All present enzymatic activity of Bovine Atp Synthase Monomer State 1 (Combined):
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Bovine Atp Synthase Monomer State 1 (Combined) (pdb code 6zpo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bovine Atp Synthase Monomer State 1 (Combined), PDB code: 6zpo:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6zpo

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Magnesium binding site 1 out of 5 in the Bovine Atp Synthase Monomer State 1 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine Atp Synthase Monomer State 1 (Combined) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:10.4
occ:1.00
 O A:HOH703 2.2 8.9 1.0
OG1 A:THR176 2.2 8.1 1.0
O A:HOH701 2.2 14.3 1.0
O2B A:ATP600 2.2 10.1 1.0
O A:HOH702 2.2 16.0 1.0
O2G A:ATP600 2.2 10.1 0.8
HB A:THR176 2.9 8.1 1.0
CB A:THR176 3.1 8.1 1.0
PG A:ATP600 3.1 10.1 0.8
O3G A:ATP600 3.3 10.1 0.8
PB A:ATP600 3.4 10.1 1.0
O3B A:ATP600 3.4 10.1 1.0
H A:THR176 3.5 8.1 1.0
HG21 A:THR176 3.8 8.1 1.0
CG2 A:THR176 4.0 8.1 1.0
O1A A:ATP600 4.1 10.1 1.0
N A:THR176 4.1 8.1 1.0
CA A:THR176 4.2 8.1 1.0
O1B A:ATP600 4.4 10.1 1.0
OD2 A:ASP269 4.4 10.9 1.0
O3A A:ATP600 4.5 10.1 1.0
O1G A:ATP600 4.5 10.1 0.8
HE2 A:LYS175 4.6 7.7 1.0
HA A:THR176 4.6 8.1 1.0
PA A:ATP600 4.6 10.1 1.0
HG22 A:THR176 4.6 8.1 1.0
HB2 A:LYS175 4.6 7.7 1.0
HG23 A:THR176 4.7 8.1 1.0
HE22 A:GLN208 4.7 9.0 1.0
O2A A:ATP600 4.8 10.1 1.0
OD1 A:ASP269 4.9 10.9 1.0

Magnesium binding site 2 out of 5 in 6zpo

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Magnesium binding site 2 out of 5 in the Bovine Atp Synthase Monomer State 1 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine Atp Synthase Monomer State 1 (Combined) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:15.0
occ:1.00
 O2B B:ATP600 2.2 17.7 1.0
O B:HOH703 2.2 9.0 1.0
O2G B:ATP600 2.2 17.7 1.0
O B:HOH701 2.2 11.1 1.0
O B:HOH702 2.2 11.4 1.0
OG1 B:THR176 2.2 11.3 1.0
HB B:THR176 2.9 11.3 1.0
CB B:THR176 3.1 11.3 1.0
PB B:ATP600 3.3 17.7 1.0
PG B:ATP600 3.4 17.7 1.0
H B:THR176 3.5 11.3 1.0
O3B B:ATP600 3.6 17.7 1.0
HG21 B:THR176 3.8 11.3 1.0
O2A B:ATP600 4.0 17.7 1.0
CG2 B:THR176 4.1 11.3 1.0
O1G B:ATP600 4.1 17.7 1.0
O1B B:ATP600 4.1 17.7 1.0
N B:THR176 4.2 11.3 1.0
CA B:THR176 4.2 11.3 1.0
OD1 B:ASP269 4.4 7.3 1.0
OD2 B:ASP269 4.4 7.3 1.0
HA B:THR176 4.5 11.3 1.0
O3A B:ATP600 4.6 17.7 1.0
O3G B:ATP600 4.6 17.7 1.0
HG22 B:THR176 4.7 11.3 1.0
HG21 B:THR212 4.7 11.2 1.0
HG23 B:THR176 4.7 11.3 1.0
PA B:ATP600 4.7 17.7 1.0
HB2 B:LYS175 4.8 10.3 1.0
OE1 B:GLN208 4.8 9.2 1.0
CG B:ASP269 4.9 7.3 1.0
OE2 B:GLU328 4.9 11.9 1.0
HE2 B:LYS175 5.0 10.3 1.0

Magnesium binding site 3 out of 5 in 6zpo

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Magnesium binding site 3 out of 5 in the Bovine Atp Synthase Monomer State 1 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bovine Atp Synthase Monomer State 1 (Combined) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:10.0
occ:1.00
 O C:HOH702 2.2 10.4 1.0
OG1 C:THR176 2.2 9.0 1.0
O2B C:ATP600 2.2 13.6 1.0
O C:HOH703 2.2 9.2 1.0
O C:HOH701 2.2 16.8 1.0
O2G C:ATP600 2.2 13.6 0.8
HB C:THR176 2.9 9.0 1.0
CB C:THR176 3.1 9.0 1.0
PG C:ATP600 3.2 13.6 0.8
PB C:ATP600 3.4 13.6 1.0
O3B C:ATP600 3.4 13.6 1.0
H C:THR176 3.5 9.0 1.0
O3G C:ATP600 3.6 13.6 0.8
O2A C:ATP600 3.6 13.6 1.0
HG21 C:THR176 3.7 9.0 1.0
CG2 C:THR176 4.0 9.0 1.0
N C:THR176 4.2 9.0 1.0
CA C:THR176 4.2 9.0 1.0
OE1 C:GLN208 4.2 9.8 1.0
O3A C:ATP600 4.4 13.6 1.0
O1B C:ATP600 4.4 13.6 1.0
PA C:ATP600 4.5 13.6 1.0
OD1 C:ASP269 4.5 6.8 1.0
OD2 C:ASP269 4.5 6.8 1.0
HG22 C:THR176 4.6 9.0 1.0
O1G C:ATP600 4.6 13.6 0.8
HA C:THR176 4.6 9.0 1.0
HG23 C:THR176 4.6 9.0 1.0
HB2 C:LYS175 4.7 8.5 1.0
HG21 C:THR212 4.8 11.2 1.0
O1A C:ATP600 4.9 13.6 1.0
CG C:ASP269 5.0 6.8 1.0

Magnesium binding site 4 out of 5 in 6zpo

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Magnesium binding site 4 out of 5 in the Bovine Atp Synthase Monomer State 1 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bovine Atp Synthase Monomer State 1 (Combined) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:9.4
occ:1.00
 OG1 D:THR163 2.2 9.2 1.0
O2B D:ADP600 2.2 12.2 1.0
O D:HOH701 2.2 11.0 1.0
O D:HOH704 2.2 9.9 1.0
O D:HOH703 2.2 9.6 1.0
O D:HOH702 2.2 9.0 1.0
HH12 D:ARG189 3.0 9.3 1.0
CB D:THR163 3.4 9.2 1.0
HB D:THR163 3.5 9.2 1.0
OE1 D:GLU192 3.6 11.8 1.0
NH1 D:ARG189 3.6 9.3 1.0
HH11 D:ARG189 3.6 9.3 1.0
PB D:ADP600 3.7 12.2 1.0
OE2 D:GLU192 3.7 11.8 1.0
H D:THR163 3.8 9.2 1.0
CD D:GLU192 4.1 11.8 1.0
HG21 D:THR163 4.1 9.2 1.0
OD2 D:ASP256 4.2 7.5 1.0
O3A D:ADP600 4.3 12.2 1.0
CG2 D:THR163 4.3 9.2 1.0
N D:THR163 4.4 9.2 1.0
HB2 D:LYS162 4.4 7.6 1.0
CA D:THR163 4.4 9.2 1.0
O3B D:ADP600 4.4 12.2 1.0
O2A D:ADP600 4.4 12.2 1.0
HE2 D:LYS162 4.4 7.6 1.0
OD1 D:ASP256 4.5 7.5 1.0
HD21 D:ASN257 4.6 6.5 1.0
HA D:THR163 4.6 9.2 1.0
O1B D:ADP600 4.6 12.2 1.0
OD1 D:ASN257 4.7 6.5 1.0
HB2 D:GLU188 4.7 10.5 1.0
HH22 D:ARG189 4.7 9.3 1.0
CZ D:ARG189 4.8 9.3 1.0
CG D:ASP256 4.8 7.5 1.0
HG23 D:THR163 4.8 9.2 1.0
OE1 D:GLU188 4.8 10.5 1.0
PA D:ADP600 4.8 12.2 1.0
HZ1 D:LYS162 5.0 7.6 1.0

Magnesium binding site 5 out of 5 in 6zpo

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Magnesium binding site 5 out of 5 in the Bovine Atp Synthase Monomer State 1 (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bovine Atp Synthase Monomer State 1 (Combined) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:9.4
occ:1.00
 OG1 F:THR163 2.2 9.9 1.0
O2B F:ADP600 2.2 13.3 1.0
O F:HOH704 2.2 11.9 1.0
O F:HOH703 2.2 9.6 1.0
O F:HOH702 2.2 9.9 1.0
O F:HOH701 2.2 13.9 1.0
HH12 F:ARG189 2.9 8.3 1.0
HB F:THR163 3.1 9.9 1.0
CB F:THR163 3.2 9.9 1.0
PB F:ADP600 3.2 13.3 1.0
O3B F:ADP600 3.4 13.3 1.0
OE2 F:GLU192 3.5 10.5 1.0
NH1 F:ARG189 3.5 8.3 1.0
HH11 F:ARG189 3.6 8.3 1.0
H F:THR163 3.7 9.9 1.0
OE1 F:GLU192 3.8 10.5 1.0
HG21 F:THR163 3.9 9.9 1.0
O3A F:ADP600 4.0 13.3 1.0
CD F:GLU192 4.1 10.5 1.0
O2A F:ADP600 4.1 13.3 1.0
CG2 F:THR163 4.2 9.9 1.0
N F:THR163 4.2 9.9 1.0
CA F:THR163 4.3 9.9 1.0
OD2 F:ASP256 4.3 9.4 1.0
HB2 F:LYS162 4.4 8.2 1.0
PA F:ADP600 4.4 13.3 1.0
O1B F:ADP600 4.5 13.3 1.0
HA F:THR163 4.6 9.9 1.0
HE2 F:LYS162 4.6 8.2 1.0
O1A F:ADP600 4.7 13.3 1.0
CZ F:ARG189 4.7 8.3 1.0
HG23 F:THR163 4.7 9.9 1.0
HH22 F:ARG189 4.8 8.3 1.0
HG22 F:THR163 4.8 9.9 1.0
HB2 F:GLU188 4.8 9.8 1.0
OD1 F:ASP256 4.8 9.4 1.0
OE2 F:GLU188 4.9 9.8 1.0

Reference:

T.E.Spikes, M.G.Montgomery, J.E.Walker. Structure of the Dimeric Atp Synthase From Bovine Mitochondria. Proc.Natl.Acad.Sci.Usa V. 117 23519 2020.
ISSN: ESSN 1091-6490
PubMed: 32900941
DOI: 10.1073/PNAS.2013998117
Page generated: Wed Oct 2 02:32:11 2024

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