Magnesium in PDB 6zsi: The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members.

The structure of The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members., PDB code: 6zsi was solved by A.Rai, N.Bleimling, I.R.Vetter, R.S.Goody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.11 / 1.91
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	116.360, 35.380, 165.670, 90.00, 93.76, 90.00
R / Rfree (%)	22.3 / 26.7

The binding sites of Magnesium atom in the The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members. (pdb code 6zsi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members., PDB code: 6zsi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:37.6 occ:1.00 O2B A:GNP201 1.9 32.8 1.0 O A:HOH311 2.0 39.6 1.0 O3G A:GNP201 2.0 33.5 1.0 OG1 A:THR22 2.1 31.2 1.0 OG1 A:THR40 2.1 36.9 1.0 O A:HOH306 2.3 35.7 1.0 PG A:GNP201 3.1 37.8 1.0 PB A:GNP201 3.1 33.7 1.0 CB A:THR40 3.2 36.1 1.0 CB A:THR22 3.2 28.1 1.0 N3B A:GNP201 3.3 35.8 1.0 N A:THR40 3.7 43.5 1.0 O2G A:GNP201 3.9 41.6 1.0 N A:THR22 3.9 29.5 1.0 OD2 A:ASP63 3.9 39.2 1.0 CA A:THR40 4.0 39.7 1.0 O2A A:GNP201 4.1 39.2 1.0 CA A:THR22 4.1 33.9 1.0 O3A A:GNP201 4.2 34.9 1.0 O A:HOH305 4.2 41.0 1.0 O1B A:GNP201 4.2 34.0 1.0 OD1 A:ASP63 4.2 38.2 1.0 CG2 A:THR22 4.3 34.6 1.0 O1G A:GNP201 4.3 39.0 1.0 CG2 A:THR40 4.3 40.5 1.0 CG A:ASP63 4.5 42.6 1.0 PA A:GNP201 4.5 34.3 1.0 O A:THR64 4.5 39.7 1.0 O A:ILE38 4.6 42.6 1.0 O1A A:GNP201 4.6 32.3 1.0 C A:SER39 4.7 40.7 1.0 CB A:LYS21 4.9 34.8 1.0 C A:LYS21 5.0 34.3 1.0 CE A:LYS21 5.0 32.6 1.0 CA A:SER39 5.0 40.3 1.0

Magnesium binding site 2 out of 2 in the The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg203 b:35.2 occ:1.00 O2B B:GNP201 1.9 31.1 1.0 O3G B:GNP201 2.1 35.0 1.0 OG1 B:THR40 2.1 35.0 1.0 O B:HOH302 2.1 35.7 1.0 OG1 B:THR22 2.1 31.2 1.0 O B:HOH303 2.1 35.4 1.0 CB B:THR40 3.1 41.6 1.0 PG B:GNP201 3.1 35.2 1.0 PB B:GNP201 3.2 32.2 1.0 CB B:THR22 3.2 31.5 1.0 N3B B:GNP201 3.4 32.2 1.0 N B:THR40 3.7 36.5 1.0 O2G B:GNP201 3.9 34.8 1.0 N B:THR22 3.9 28.9 1.0 CA B:THR40 3.9 39.0 1.0 OD2 B:ASP63 4.0 40.7 1.0 O2A B:GNP201 4.0 31.3 1.0 CA B:THR22 4.1 32.7 1.0 CG2 B:THR40 4.2 39.7 1.0 O3A B:GNP201 4.2 30.0 1.0 OD1 B:ASP63 4.2 35.6 1.0 O B:HOH301 4.2 46.2 1.0 O1B B:GNP201 4.3 30.9 1.0 CG2 B:THR22 4.3 32.8 1.0 O1G B:GNP201 4.4 36.9 1.0 O B:THR64 4.4 37.3 1.0 CG B:ASP63 4.5 43.5 1.0 PA B:GNP201 4.5 33.7 1.0 O1A B:GNP201 4.6 31.7 1.0 O B:ILE38 4.7 36.9 1.0 C B:SER39 4.7 38.4 1.0 CB B:LYS21 4.9 31.1 1.0 CE B:LYS21 5.0 29.1 1.0

A.Rai, N.Bleimling, I.R.Vetter, R.S.Goody. The Mechanism of Activation of the Actin Binding Protein EHBP1 By RAB8 Family Members. Nat Commun V. 11 4187 2020.
ISSN: ESSN 2041-1723
PubMed: 32826901
DOI: 10.1038/S41467-020-17792-3