Magnesium in PDB 7aap: NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp

All present enzymatic activity of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp:
2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13;

The structure of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp also contains other interesting chemical elements:

Fluorine	(F)	1 atom
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp (pdb code 7aap). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp, PDB code: 7aap:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1003 b:68.1 occ:1.00 O09 T:GE61601 2.9 79.7 1.0 O A:TYR619 3.4 53.5 1.0 MG P:MG101 3.7 71.5 1.0 P01 T:GE61601 4.0 79.7 1.0 OD2 A:ASP760 4.0 55.3 1.0 O08 T:GE61601 4.2 79.7 1.0 C05 T:GE61601 4.3 79.7 1.0 N A:TYR619 4.3 53.5 1.0 C A:TYR619 4.4 53.5 1.0 CB A:CYS622 4.4 62.2 1.0 CB A:ASP760 4.5 55.3 1.0 CG A:ASP760 4.6 55.3 1.0 O06 T:GE61601 4.7 79.7 1.0 CB A:ASP618 4.7 60.4 1.0 CA A:TYR619 4.8 53.5 1.0 CB A:TYR619 4.9 53.5 1.0 OD2 A:ASP618 5.0 60.4 1.0

Magnesium binding site 2 out of 3 in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1004 b:88.3 occ:1.00 OD1 A:ASN209 2.1 66.5 1.0 O3 A:POP1005 2.2 72.7 0.5 O5 A:POP1005 2.2 72.7 0.5 OD2 A:ASP218 2.5 87.7 1.0 CG A:ASN209 3.3 66.5 1.0 P1 A:POP1005 3.4 72.7 0.5 P2 A:POP1005 3.5 72.7 0.5 CG A:ASP218 3.6 87.7 1.0 O A:POP1005 3.7 72.7 0.5 ND2 A:ASN209 3.9 66.5 1.0 O1 A:POP1005 3.9 72.7 0.5 CB A:ASP218 4.1 87.7 1.0 OD2 A:ASP208 4.1 62.3 1.0 O4 A:POP1005 4.3 72.7 0.5 CG A:ASP208 4.3 62.3 1.0 OD1 A:ASP208 4.4 62.3 1.0 CB A:ASN209 4.5 66.5 1.0 CA A:ASN209 4.6 66.5 1.0 O A:ASP208 4.6 62.3 1.0 O6 A:POP1005 4.6 72.7 0.5 O2 A:POP1005 4.6 72.7 0.5 OD1 A:ASP218 4.7 87.7 1.0 N A:ASN209 4.7 66.5 1.0 C A:ASP208 4.8 62.3 1.0 CB A:ASP208 5.0 62.3 1.0

Magnesium binding site 3 out of 3 in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg101 b:71.5 occ:1.00 O15 T:GE61601 2.5 79.7 1.0 O09 T:GE61601 2.7 79.7 1.0 O10 T:GE61601 3.1 79.7 1.0 P03 T:GE61601 3.3 79.7 1.0 O3' P:U20 3.4 14.0 1.0 MG A:MG1003 3.7 68.1 1.0 O11 T:GE61601 3.8 79.7 1.0 P01 T:GE61601 4.0 79.7 1.0 CB A:ASP760 4.2 55.3 1.0 O07 T:GE61601 4.3 79.7 1.0 N A:ASP761 4.4 53.3 1.0 C3' P:U20 4.4 14.0 1.0 P02 T:GE61601 4.4 79.7 1.0 CB A:ASP761 4.6 53.3 1.0 O12 T:GE61601 4.6 79.7 1.0 OD2 A:ASP761 4.7 53.3 1.0 CG A:ASP761 4.7 53.3 1.0 C A:ASP760 4.7 55.3 1.0 CA A:ASP761 4.7 53.3 1.0 O06 T:GE61601 4.8 79.7 1.0 C05 T:GE61601 5.0 79.7 1.0 C5' P:U20 5.0 14.0 1.0

K.Naydenova, K.W.Muir, L.F.Wu, Z.Zhang, F.Coscia, M.Peet, P.Castro-Hartman, P.Qian, K.Sader, K.Dent, D.Kimanius, J.D.Sutherland, J.Loewe, D.Barford, C.J.Russo. NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp To Be Published.