Magnesium in PDB 7ark: Lolcde in Complex with Amp-Pnp in the Closed Nbd State

The binding sites of Magnesium atom in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State (pdb code 7ark). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State, PDB code: 7ark:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lolcde in Complex with Amp-Pnp in the Closed Nbd State within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:49.7 occ:1.00 O1G D:ANP401 2.2 61.4 1.0 NE2 D:GLN94 2.3 32.6 1.0 CD D:GLN94 2.9 32.6 1.0 OE1 D:GLN94 3.3 32.6 1.0 OD2 D:ASP170 3.4 38.5 1.0 PG D:ANP401 3.5 61.4 1.0 CG D:GLN94 4.0 32.6 1.0 O3G D:ANP401 4.1 61.4 1.0 CB D:ASP170 4.2 38.5 1.0 CG D:ASP170 4.2 38.5 1.0 N3B D:ANP401 4.2 61.4 1.0 O D:LYS48 4.5 57.8 1.0 CA F:GLY148 4.6 38.9 1.0 O2G D:ANP401 4.7 61.4 1.0 N F:GLY148 5.0 38.9 1.0 CB D:SER49 5.0 55.7 1.0

Magnesium binding site 2 out of 2 in the Lolcde in Complex with Amp-Pnp in the Closed Nbd State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lolcde in Complex with Amp-Pnp in the Closed Nbd State within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:39.5 occ:1.00 OD1 F:ASP170 2.2 34.2 1.0 NE2 F:GLN94 2.6 36.2 1.0 CG F:ASP170 3.0 34.2 1.0 OD2 F:ASP170 3.1 34.2 1.0 CD F:GLN94 3.3 36.2 1.0 O1G F:ANP401 3.4 63.4 1.0 CG F:GLN94 3.8 36.2 1.0 OE1 F:GLN94 4.1 36.2 1.0 NZ F:LYS48 4.3 64.0 1.0 O3G F:ANP401 4.3 63.4 1.0 CA D:GLY148 4.4 37.5 1.0 CB F:ASP170 4.4 34.2 1.0 PG F:ANP401 4.5 63.4 1.0 CB F:SER49 4.8 55.1 1.0 CB F:GLN94 5.0 36.2 1.0 N D:GLY148 5.0 37.5 1.0

X.D.Tang, S.H.Chang, K.Zhang, T.Wang, Q.H.Luo, W.Qiao, C.Wang, Z.B.Zhang, Z.Y.Zhang, X.F.Zhu, C.J.Dong, X.Zhang, H.H.Dong. Structural Basis For Bacterial Lipoprotein Relocation By the Transporter Lolcde Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-021-00573-X