Magnesium in PDB 7aus: Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with P15

All present enzymatic activity of Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with P15:
3.6.1.52; 3.6.1.60;

The structure of Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with P15, PDB code: 7aus was solved by M.A.Marquez-Monino, B.Gonzalez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.68 / 1.75
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	61.67, 61.67, 95.73, 90, 90, 120
R / Rfree (%)	24.1 / 27.9

The binding sites of Magnesium atom in the Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with P15 (pdb code 7aus). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with P15, PDB code: 7aus:

Magnesium binding site 1 out of 1 in the Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with P15


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in Complex with P15 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:43.1 occ:1.00 OE1 A:GLU84 2.1 31.6 1.0 O53 A:RYT201 2.2 67.2 1.0 O64 A:RYT201 2.2 68.5 1.0 O A:LYS63 2.3 36.9 1.0 O52 A:RYT201 2.4 59.6 1.0 O A:HOH343 2.7 41.8 1.0 P13 A:RYT201 3.2 74.5 1.0 CD A:GLU84 3.2 31.5 1.0 P12 A:RYT201 3.4 60.8 1.0 C A:LYS63 3.4 32.5 1.0 P14 A:RYT201 3.4 78.1 1.0 OE2 A:GLU84 3.5 33.2 1.0 O44 A:RYT201 3.5 77.5 1.0 O43 A:RYT201 3.5 66.5 1.0 O A:HOH311 3.6 45.4 1.0 CA A:GLY64 3.9 30.8 1.0 O51 A:RYT201 4.0 55.1 1.0 N A:GLY64 4.1 31.0 1.0 NH2 A:ARG152 4.1 38.1 1.0 OE2 A:GLU80 4.2 45.4 1.0 O42 A:RYT201 4.3 57.5 1.0 O45 A:RYT201 4.4 86.2 1.0 NZ A:LYS63 4.4 38.7 1.0 O54 A:RYT201 4.5 73.0 1.0 CG A:GLU84 4.5 31.1 1.0 O63 A:RYT201 4.6 77.7 1.0 P11 A:RYT201 4.6 53.3 1.0 N A:LYS63 4.6 29.1 1.0 CG A:LYS63 4.6 36.7 1.0 CA A:LYS63 4.6 31.1 1.0 O62 A:RYT201 4.7 62.7 1.0 CD A:GLU80 4.8 38.7 1.0 O41 A:RYT201 4.8 54.5 1.0 O A:HOH332 5.0 42.1 1.0

M.A.Marquez-Monino, R.Ortega-Garcia, M.L.Shipton, E.Franco-Echevarria, A.M.Riley, J.Sanz-Aparicio, B.V.L.Potter, B.Gonzalez. Multiple Substrate Recognition By Yeast Diadenosine and Diphosphoinositol Polyphosphate Phosphohydrolase Through Phosphate Clamping. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 33893105
DOI: 10.1126/SCIADV.ABF6744