Magnesium in PDB 7c52: Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
Protein crystallography data
The structure of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip, PDB code: 7c52
was solved by
L.-J.Yu,
Z.-Y.Wang-Otomo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.99 /
2.89
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
96.435,
183.335,
123.857,
90,
112.58,
90
|
|
R / Rfree (%)
|
21.9 /
24.8
|
Other elements in 7c52:
The structure of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
36;
Binding sites:
The binding sites of Magnesium atom in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
(pdb code 7c52). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 36 binding sites of Magnesium where determined in the
Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip, PDB code: 7c52:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 1 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:77.1
occ:1.00
|
MG
|
L:BCL301
|
0.0
|
77.1
|
1.0
|
|
ND
|
L:BCL301
|
2.0
|
77.2
|
1.0
|
|
NB
|
L:BCL301
|
2.1
|
76.4
|
1.0
|
|
NC
|
L:BCL301
|
2.1
|
76.2
|
1.0
|
|
NA
|
L:BCL301
|
2.2
|
77.3
|
1.0
|
|
NE2
|
L:HIS162
|
2.2
|
77.9
|
1.0
|
|
C4D
|
L:BCL301
|
3.0
|
78.7
|
1.0
|
|
CD2
|
L:HIS162
|
3.1
|
77.7
|
1.0
|
|
C4B
|
L:BCL301
|
3.1
|
74.7
|
1.0
|
|
C1B
|
L:BCL301
|
3.1
|
76.6
|
1.0
|
|
C1C
|
L:BCL301
|
3.1
|
76.6
|
1.0
|
|
C1D
|
L:BCL301
|
3.1
|
78.3
|
1.0
|
|
C4A
|
L:BCL301
|
3.2
|
78.5
|
1.0
|
|
C4C
|
L:BCL301
|
3.2
|
73.9
|
1.0
|
|
C1A
|
L:BCL301
|
3.2
|
76.9
|
1.0
|
|
CE1
|
L:HIS162
|
3.2
|
78.6
|
1.0
|
|
CHC
|
L:BCL301
|
3.4
|
75.7
|
1.0
|
|
CHB
|
L:BCL301
|
3.4
|
78.2
|
1.0
|
|
CHA
|
L:BCL301
|
3.5
|
78.0
|
1.0
|
|
CHD
|
L:BCL301
|
3.5
|
76.0
|
1.0
|
|
C3D
|
L:BCL301
|
4.2
|
80.5
|
1.0
|
|
CG
|
L:HIS162
|
4.2
|
79.2
|
1.0
|
|
ND1
|
L:HIS162
|
4.3
|
79.6
|
1.0
|
|
C2D
|
L:BCL301
|
4.3
|
80.8
|
1.0
|
|
C2B
|
L:BCL301
|
4.3
|
76.1
|
1.0
|
|
C3B
|
L:BCL301
|
4.4
|
75.8
|
1.0
|
|
C2C
|
L:BCL301
|
4.4
|
75.3
|
1.0
|
|
C20
|
L:BPH303
|
4.4
|
72.6
|
1.0
|
|
C3A
|
L:BCL301
|
4.5
|
78.3
|
1.0
|
|
C3C
|
L:BCL301
|
4.5
|
71.0
|
1.0
|
|
C2A
|
L:BCL301
|
4.5
|
78.7
|
1.0
|
|
OBB
|
L:BPH303
|
4.6
|
88.0
|
1.0
|
|
CBD
|
L:BCL301
|
4.9
|
81.5
|
1.0
|
|
CE2
|
M:TYR210
|
4.9
|
73.0
|
1.0
|
|
CMC
|
L:BCL301
|
5.0
|
76.3
|
1.0
|
|
Magnesium binding site 2 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 2 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg302
b:62.2
occ:1.00
|
MG
|
L:BCL302
|
0.0
|
62.2
|
1.0
|
|
ND
|
L:BCL302
|
2.0
|
61.7
|
1.0
|
|
NB
|
L:BCL302
|
2.1
|
71.3
|
1.0
|
|
NC
|
L:BCL302
|
2.1
|
62.2
|
1.0
|
|
NA
|
L:BCL302
|
2.2
|
66.3
|
1.0
|
|
NE2
|
L:HIS182
|
2.2
|
61.4
|
1.0
|
|
CD2
|
L:HIS182
|
3.0
|
60.2
|
1.0
|
|
C4D
|
L:BCL302
|
3.0
|
62.2
|
1.0
|
|
C1B
|
L:BCL302
|
3.1
|
72.1
|
1.0
|
|
C4B
|
L:BCL302
|
3.1
|
70.0
|
1.0
|
|
C1C
|
L:BCL302
|
3.1
|
67.3
|
1.0
|
|
C4A
|
L:BCL302
|
3.1
|
65.7
|
1.0
|
|
C1D
|
L:BCL302
|
3.2
|
62.0
|
1.0
|
|
C4C
|
L:BCL302
|
3.2
|
63.3
|
1.0
|
|
C1A
|
L:BCL302
|
3.2
|
68.5
|
1.0
|
|
CE1
|
L:HIS182
|
3.3
|
60.7
|
1.0
|
|
CHC
|
L:BCL302
|
3.4
|
69.4
|
1.0
|
|
CHB
|
L:BCL302
|
3.4
|
69.2
|
1.0
|
|
CHA
|
L:BCL302
|
3.5
|
65.5
|
1.0
|
|
CHD
|
L:BCL302
|
3.5
|
63.3
|
1.0
|
|
CBB
|
M:BCL401
|
3.7
|
73.3
|
1.0
|
|
CAB
|
M:BCL401
|
3.8
|
77.5
|
1.0
|
|
OBB
|
M:BCL401
|
3.9
|
84.6
|
1.0
|
|
CG
|
L:HIS182
|
4.2
|
61.0
|
1.0
|
|
C3D
|
L:BCL302
|
4.2
|
61.5
|
1.0
|
|
ND1
|
L:HIS182
|
4.3
|
60.5
|
1.0
|
|
C2B
|
L:BCL302
|
4.3
|
69.3
|
1.0
|
|
C2D
|
L:BCL302
|
4.3
|
61.2
|
1.0
|
|
C3B
|
L:BCL302
|
4.3
|
71.5
|
1.0
|
|
C3A
|
L:BCL302
|
4.4
|
64.6
|
1.0
|
|
C2C
|
L:BCL302
|
4.5
|
65.8
|
1.0
|
|
C3C
|
L:BCL302
|
4.5
|
63.3
|
1.0
|
|
C2A
|
L:BCL302
|
4.5
|
68.2
|
1.0
|
|
C3B
|
M:BCL401
|
4.6
|
74.7
|
1.0
|
|
CD2
|
L:PHE176
|
4.7
|
66.2
|
1.0
|
|
CE2
|
L:PHE176
|
4.7
|
65.6
|
1.0
|
|
CBD
|
L:BCL302
|
5.0
|
65.4
|
1.0
|
|
CMA
|
L:BCL302
|
5.0
|
59.2
|
1.0
|
|
Magnesium binding site 3 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 3 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg305
b:77.6
occ:1.00
|
MG
|
L:BCL305
|
0.0
|
77.6
|
1.0
|
|
ND
|
L:BCL305
|
2.0
|
75.4
|
1.0
|
|
NB
|
L:BCL305
|
2.1
|
80.8
|
1.0
|
|
NC
|
L:BCL305
|
2.1
|
75.3
|
1.0
|
|
NA
|
L:BCL305
|
2.2
|
79.2
|
1.0
|
|
NE2
|
M:HIS182
|
2.2
|
75.5
|
1.0
|
|
C4D
|
L:BCL305
|
3.0
|
77.1
|
1.0
|
|
CD2
|
M:HIS182
|
3.0
|
74.4
|
1.0
|
|
C4B
|
L:BCL305
|
3.1
|
80.7
|
1.0
|
|
C1B
|
L:BCL305
|
3.1
|
82.3
|
1.0
|
|
C1D
|
L:BCL305
|
3.1
|
76.0
|
1.0
|
|
C1C
|
L:BCL305
|
3.1
|
76.2
|
1.0
|
|
C4A
|
L:BCL305
|
3.1
|
79.0
|
1.0
|
|
C4C
|
L:BCL305
|
3.2
|
73.7
|
1.0
|
|
C1A
|
L:BCL305
|
3.2
|
80.1
|
1.0
|
|
CE1
|
M:HIS182
|
3.3
|
74.2
|
1.0
|
|
CHC
|
L:BCL305
|
3.4
|
80.1
|
1.0
|
|
CHB
|
L:BCL305
|
3.4
|
80.7
|
1.0
|
|
CHA
|
L:BCL305
|
3.5
|
79.8
|
1.0
|
|
CHD
|
L:BCL305
|
3.5
|
75.9
|
1.0
|
|
C3D
|
L:BCL305
|
4.2
|
76.5
|
1.0
|
|
CG
|
M:HIS182
|
4.2
|
75.2
|
1.0
|
|
C2D
|
L:BCL305
|
4.3
|
74.9
|
1.0
|
|
ND1
|
M:HIS182
|
4.3
|
74.4
|
1.0
|
|
C2B
|
L:BCL305
|
4.3
|
82.0
|
1.0
|
|
C3B
|
L:BCL305
|
4.3
|
79.7
|
1.0
|
|
C3A
|
L:BCL305
|
4.4
|
79.0
|
1.0
|
|
C2C
|
L:BCL305
|
4.4
|
74.0
|
1.0
|
|
C3C
|
L:BCL305
|
4.5
|
71.1
|
1.0
|
|
C2A
|
L:BCL305
|
4.5
|
79.0
|
1.0
|
|
OBB
|
M:BPH402
|
4.6
|
92.2
|
1.0
|
|
C18
|
M:CRT405
|
4.8
|
73.2
|
1.0
|
|
CE2
|
L:PHE190
|
4.8
|
82.9
|
1.0
|
|
CBD
|
L:BCL305
|
4.9
|
77.9
|
1.0
|
|
CMA
|
L:BCL305
|
5.0
|
79.4
|
1.0
|
|
Magnesium binding site 4 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 4 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg401
b:77.0
occ:1.00
|
MG
|
M:BCL401
|
0.0
|
77.0
|
1.0
|
|
ND
|
M:BCL401
|
2.0
|
79.2
|
1.0
|
|
NB
|
M:BCL401
|
2.1
|
78.8
|
1.0
|
|
NC
|
M:BCL401
|
2.1
|
73.4
|
1.0
|
|
NA
|
M:BCL401
|
2.2
|
79.5
|
1.0
|
|
NE2
|
M:HIS202
|
2.2
|
78.5
|
1.0
|
|
C4D
|
M:BCL401
|
3.0
|
80.6
|
1.0
|
|
CE1
|
M:HIS202
|
3.0
|
79.0
|
1.0
|
|
C4B
|
M:BCL401
|
3.1
|
73.7
|
1.0
|
|
C1B
|
M:BCL401
|
3.1
|
80.1
|
1.0
|
|
C1C
|
M:BCL401
|
3.1
|
70.8
|
1.0
|
|
C1D
|
M:BCL401
|
3.2
|
80.0
|
1.0
|
|
C4A
|
M:BCL401
|
3.2
|
79.3
|
1.0
|
|
C4C
|
M:BCL401
|
3.2
|
71.0
|
1.0
|
|
C1A
|
M:BCL401
|
3.2
|
79.5
|
1.0
|
|
CD2
|
M:HIS202
|
3.2
|
79.4
|
1.0
|
|
CHC
|
M:BCL401
|
3.4
|
70.9
|
1.0
|
|
CHB
|
M:BCL401
|
3.4
|
80.6
|
1.0
|
|
CHA
|
M:BCL401
|
3.4
|
80.1
|
1.0
|
|
CBB
|
L:BCL302
|
3.4
|
74.2
|
1.0
|
|
CHD
|
M:BCL401
|
3.5
|
75.8
|
1.0
|
|
CAB
|
L:BCL302
|
3.8
|
75.7
|
1.0
|
|
OBB
|
L:BCL302
|
4.0
|
80.8
|
1.0
|
|
ND1
|
M:HIS202
|
4.2
|
80.2
|
1.0
|
|
C3D
|
M:BCL401
|
4.2
|
81.3
|
1.0
|
|
C2B
|
M:BCL401
|
4.3
|
75.4
|
1.0
|
|
C2C
|
M:BCL401
|
4.3
|
65.8
|
1.0
|
|
C2D
|
M:BCL401
|
4.3
|
81.5
|
1.0
|
|
CG
|
M:HIS202
|
4.3
|
79.6
|
1.0
|
|
C3B
|
M:BCL401
|
4.3
|
74.7
|
1.0
|
|
C3C
|
M:BCL401
|
4.4
|
66.7
|
1.0
|
|
C3A
|
M:BCL401
|
4.5
|
77.7
|
1.0
|
|
C2A
|
M:BCL401
|
4.5
|
76.6
|
1.0
|
|
C3B
|
L:BCL302
|
4.6
|
71.5
|
1.0
|
|
CBD
|
M:BCL401
|
4.8
|
80.0
|
1.0
|
|
CMC
|
M:BCL401
|
4.8
|
61.9
|
1.0
|
|
CD1
|
M:ILE206
|
5.0
|
66.5
|
1.0
|
|
Magnesium binding site 5 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 5 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:133.0
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
133.0
|
1.0
|
|
ND
|
A:BCL101
|
2.0
|
133.9
|
1.0
|
|
NB
|
A:BCL101
|
2.1
|
133.9
|
1.0
|
|
NC
|
A:BCL101
|
2.1
|
131.1
|
1.0
|
|
NA
|
A:BCL101
|
2.2
|
136.5
|
1.0
|
|
NE2
|
A:HIS36
|
2.2
|
131.4
|
1.0
|
|
C4D
|
A:BCL101
|
3.0
|
135.8
|
1.0
|
|
C1B
|
A:BCL101
|
3.1
|
134.0
|
1.0
|
|
C4B
|
A:BCL101
|
3.1
|
133.0
|
1.0
|
|
CE1
|
A:HIS36
|
3.1
|
130.1
|
1.0
|
|
C1C
|
A:BCL101
|
3.1
|
130.8
|
1.0
|
|
C4A
|
A:BCL101
|
3.1
|
135.9
|
1.0
|
|
C1D
|
A:BCL101
|
3.1
|
134.8
|
1.0
|
|
C4C
|
A:BCL101
|
3.2
|
130.9
|
1.0
|
|
CD2
|
A:HIS36
|
3.2
|
129.9
|
1.0
|
|
C1A
|
A:BCL101
|
3.2
|
138.4
|
1.0
|
|
CHB
|
A:BCL101
|
3.4
|
134.7
|
1.0
|
|
CHC
|
A:BCL101
|
3.4
|
131.9
|
1.0
|
|
CHA
|
A:BCL101
|
3.5
|
139.2
|
1.0
|
|
CHD
|
A:BCL101
|
3.5
|
132.3
|
1.0
|
|
CMD
|
A:BCL103
|
4.0
|
114.8
|
1.0
|
|
ND1
|
A:HIS36
|
4.2
|
128.1
|
1.0
|
|
C3D
|
A:BCL101
|
4.2
|
138.9
|
1.0
|
|
C2B
|
A:BCL101
|
4.2
|
133.8
|
1.0
|
|
C3B
|
A:BCL101
|
4.3
|
134.1
|
1.0
|
|
CG
|
A:HIS36
|
4.3
|
128.3
|
1.0
|
|
C2D
|
A:BCL101
|
4.3
|
137.5
|
1.0
|
|
C2C
|
A:BCL101
|
4.5
|
130.8
|
1.0
|
|
C3A
|
A:BCL101
|
4.5
|
135.3
|
1.0
|
|
C3C
|
A:BCL101
|
4.5
|
132.1
|
1.0
|
|
C2A
|
A:BCL101
|
4.5
|
138.6
|
1.0
|
|
CMB
|
9:BCL103
|
4.8
|
128.6
|
1.0
|
|
CBB
|
9:BCL103
|
4.9
|
129.0
|
1.0
|
|
C2D
|
A:BCL103
|
4.9
|
116.0
|
1.0
|
|
OBD
|
A:BCL103
|
4.9
|
120.8
|
1.0
|
|
CBD
|
A:BCL101
|
4.9
|
143.5
|
1.0
|
|
Magnesium binding site 6 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 6 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg103
b:124.7
occ:1.00
|
MG
|
A:BCL103
|
0.0
|
124.7
|
1.0
|
|
ND
|
A:BCL103
|
2.0
|
120.5
|
1.0
|
|
NB
|
A:BCL103
|
2.1
|
123.8
|
1.0
|
|
NC
|
A:BCL103
|
2.1
|
120.8
|
1.0
|
|
NA
|
A:BCL103
|
2.2
|
124.0
|
1.0
|
|
NE2
|
B:HIS36
|
2.2
|
133.9
|
1.0
|
|
C4D
|
A:BCL103
|
3.0
|
119.7
|
1.0
|
|
CE1
|
B:HIS36
|
3.0
|
134.9
|
1.0
|
|
C4B
|
A:BCL103
|
3.1
|
122.6
|
1.0
|
|
C1B
|
A:BCL103
|
3.1
|
124.7
|
1.0
|
|
C1C
|
A:BCL103
|
3.1
|
121.4
|
1.0
|
|
C4A
|
A:BCL103
|
3.2
|
126.0
|
1.0
|
|
C1D
|
A:BCL103
|
3.2
|
118.1
|
1.0
|
|
C4C
|
A:BCL103
|
3.2
|
119.8
|
1.0
|
|
C1A
|
A:BCL103
|
3.2
|
123.5
|
1.0
|
|
CD2
|
B:HIS36
|
3.3
|
136.6
|
1.0
|
|
CHC
|
A:BCL103
|
3.4
|
122.2
|
1.0
|
|
CHB
|
A:BCL103
|
3.4
|
124.9
|
1.0
|
|
CHA
|
A:BCL103
|
3.5
|
122.2
|
1.0
|
|
CHD
|
A:BCL103
|
3.5
|
117.8
|
1.0
|
|
ND1
|
B:HIS36
|
4.2
|
138.4
|
1.0
|
|
C3D
|
A:BCL103
|
4.2
|
118.5
|
1.0
|
|
C2B
|
A:BCL103
|
4.3
|
123.6
|
1.0
|
|
C3B
|
A:BCL103
|
4.3
|
122.5
|
1.0
|
|
CG
|
B:HIS36
|
4.3
|
140.4
|
1.0
|
|
C2D
|
A:BCL103
|
4.3
|
116.0
|
1.0
|
|
C3C
|
A:BCL103
|
4.4
|
123.7
|
1.0
|
|
C2C
|
A:BCL103
|
4.4
|
123.5
|
1.0
|
|
C3A
|
A:BCL103
|
4.5
|
128.2
|
1.0
|
|
C2A
|
A:BCL103
|
4.5
|
126.6
|
1.0
|
|
CMB
|
D:BCL101
|
4.6
|
109.6
|
1.0
|
|
CG2
|
A:ILE35
|
4.6
|
124.6
|
1.0
|
|
CMD
|
A:BCL101
|
4.6
|
138.3
|
1.0
|
|
CBB
|
D:BCL101
|
4.7
|
114.5
|
1.0
|
|
CD1
|
A:ILE35
|
4.8
|
126.2
|
1.0
|
|
CBD
|
A:BCL103
|
4.9
|
123.5
|
1.0
|
|
Magnesium binding site 7 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 7 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:121.1
occ:1.00
|
MG
|
D:BCL101
|
0.0
|
121.1
|
1.0
|
|
ND
|
D:BCL101
|
2.0
|
125.7
|
1.0
|
|
NB
|
D:BCL101
|
2.1
|
119.9
|
1.0
|
|
NC
|
D:BCL101
|
2.1
|
122.3
|
1.0
|
|
NA
|
D:BCL101
|
2.2
|
125.4
|
1.0
|
|
NE2
|
D:HIS36
|
2.2
|
118.0
|
1.0
|
|
CE1
|
D:HIS36
|
2.9
|
117.1
|
1.0
|
|
C4D
|
D:BCL101
|
3.0
|
128.9
|
1.0
|
|
C1B
|
D:BCL101
|
3.1
|
118.5
|
1.0
|
|
C4B
|
D:BCL101
|
3.1
|
118.3
|
1.0
|
|
C1C
|
D:BCL101
|
3.1
|
122.5
|
1.0
|
|
C4A
|
D:BCL101
|
3.1
|
125.1
|
1.0
|
|
C1D
|
D:BCL101
|
3.1
|
127.3
|
1.0
|
|
C4C
|
D:BCL101
|
3.2
|
122.5
|
1.0
|
|
C1A
|
D:BCL101
|
3.2
|
128.8
|
1.0
|
|
CD2
|
D:HIS36
|
3.3
|
116.4
|
1.0
|
|
CHB
|
D:BCL101
|
3.4
|
121.2
|
1.0
|
|
CHC
|
D:BCL101
|
3.4
|
120.3
|
1.0
|
|
CHA
|
D:BCL101
|
3.5
|
130.5
|
1.0
|
|
CHD
|
D:BCL101
|
3.5
|
124.6
|
1.0
|
|
CMD
|
D:BCL103
|
4.1
|
122.1
|
1.0
|
|
ND1
|
D:HIS36
|
4.1
|
114.9
|
1.0
|
|
C2B
|
D:BCL101
|
4.2
|
114.0
|
1.0
|
|
C3D
|
D:BCL101
|
4.2
|
131.4
|
1.0
|
|
C3B
|
D:BCL101
|
4.3
|
115.8
|
1.0
|
|
C2D
|
D:BCL101
|
4.3
|
129.8
|
1.0
|
|
CG
|
D:HIS36
|
4.4
|
114.4
|
1.0
|
|
C2C
|
D:BCL101
|
4.5
|
124.0
|
1.0
|
|
C3C
|
D:BCL101
|
4.5
|
123.5
|
1.0
|
|
C3A
|
D:BCL101
|
4.5
|
126.8
|
1.0
|
|
C2A
|
D:BCL101
|
4.5
|
128.9
|
1.0
|
|
CMB
|
A:BCL103
|
4.7
|
122.0
|
1.0
|
|
CBB
|
A:BCL103
|
4.8
|
123.6
|
1.0
|
|
OBD
|
D:BCL103
|
4.9
|
126.1
|
1.0
|
|
CBD
|
D:BCL101
|
4.9
|
133.4
|
1.0
|
|
C2D
|
D:BCL103
|
5.0
|
123.7
|
1.0
|
|
Magnesium binding site 8 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 8 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg103
b:126.0
occ:1.00
|
MG
|
D:BCL103
|
0.0
|
126.0
|
1.0
|
|
ND
|
D:BCL103
|
2.0
|
125.4
|
1.0
|
|
NB
|
D:BCL103
|
2.1
|
123.8
|
1.0
|
|
NC
|
D:BCL103
|
2.1
|
125.3
|
1.0
|
|
NA
|
D:BCL103
|
2.2
|
126.4
|
1.0
|
|
NE2
|
E:HIS36
|
2.2
|
130.9
|
1.0
|
|
CE1
|
E:HIS36
|
2.9
|
131.6
|
1.0
|
|
C4D
|
D:BCL103
|
3.0
|
125.1
|
1.0
|
|
C4B
|
D:BCL103
|
3.1
|
123.4
|
1.0
|
|
C1B
|
D:BCL103
|
3.1
|
123.4
|
1.0
|
|
C1C
|
D:BCL103
|
3.1
|
124.2
|
1.0
|
|
C4A
|
D:BCL103
|
3.1
|
125.7
|
1.0
|
|
C1D
|
D:BCL103
|
3.1
|
125.1
|
1.0
|
|
C4C
|
D:BCL103
|
3.2
|
123.8
|
1.0
|
|
C1A
|
D:BCL103
|
3.2
|
126.9
|
1.0
|
|
CD2
|
E:HIS36
|
3.3
|
134.2
|
1.0
|
|
CHC
|
D:BCL103
|
3.4
|
124.0
|
1.0
|
|
CHB
|
D:BCL103
|
3.4
|
124.2
|
1.0
|
|
CHA
|
D:BCL103
|
3.5
|
126.1
|
1.0
|
|
CHD
|
D:BCL103
|
3.5
|
124.9
|
1.0
|
|
ND1
|
E:HIS36
|
4.1
|
135.6
|
1.0
|
|
C3D
|
D:BCL103
|
4.2
|
124.8
|
1.0
|
|
C2B
|
D:BCL103
|
4.3
|
123.6
|
1.0
|
|
C3B
|
D:BCL103
|
4.3
|
122.6
|
1.0
|
|
C2D
|
D:BCL103
|
4.3
|
123.7
|
1.0
|
|
CG
|
E:HIS36
|
4.3
|
137.0
|
1.0
|
|
CMB
|
F:BCL101
|
4.3
|
121.3
|
1.0
|
|
CMD
|
D:BCL101
|
4.4
|
130.3
|
1.0
|
|
C2C
|
D:BCL103
|
4.4
|
123.7
|
1.0
|
|
C3C
|
D:BCL103
|
4.5
|
122.0
|
1.0
|
|
C3A
|
D:BCL103
|
4.5
|
126.2
|
1.0
|
|
C2A
|
D:BCL103
|
4.5
|
126.7
|
1.0
|
|
CBB
|
F:BCL101
|
4.6
|
119.7
|
1.0
|
|
CG2
|
D:ILE35
|
4.6
|
112.3
|
1.0
|
|
CD1
|
D:ILE35
|
4.9
|
107.3
|
1.0
|
|
CBD
|
D:BCL103
|
4.9
|
126.5
|
1.0
|
|
Magnesium binding site 9 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 9 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:124.4
occ:1.00
|
MG
|
F:BCL101
|
0.0
|
124.4
|
1.0
|
|
ND
|
F:BCL101
|
2.0
|
128.6
|
1.0
|
|
NB
|
F:BCL101
|
2.1
|
121.1
|
1.0
|
|
NC
|
F:BCL101
|
2.1
|
124.4
|
1.0
|
|
NA
|
F:BCL101
|
2.2
|
125.9
|
1.0
|
|
NE2
|
F:HIS36
|
2.2
|
126.0
|
1.0
|
|
C4D
|
F:BCL101
|
3.0
|
131.0
|
1.0
|
|
C1B
|
F:BCL101
|
3.1
|
120.0
|
1.0
|
|
CE1
|
F:HIS36
|
3.1
|
125.5
|
1.0
|
|
C4B
|
F:BCL101
|
3.1
|
121.4
|
1.0
|
|
C1C
|
F:BCL101
|
3.1
|
124.0
|
1.0
|
|
C4A
|
F:BCL101
|
3.1
|
124.0
|
1.0
|
|
C1D
|
F:BCL101
|
3.2
|
129.9
|
1.0
|
|
C4C
|
F:BCL101
|
3.2
|
124.3
|
1.0
|
|
C1A
|
F:BCL101
|
3.2
|
128.7
|
1.0
|
|
CD2
|
F:HIS36
|
3.2
|
125.0
|
1.0
|
|
CHB
|
F:BCL101
|
3.4
|
120.8
|
1.0
|
|
CHC
|
F:BCL101
|
3.4
|
122.8
|
1.0
|
|
CHA
|
F:BCL101
|
3.5
|
131.6
|
1.0
|
|
CHD
|
F:BCL101
|
3.5
|
126.8
|
1.0
|
|
CMD
|
F:BCL103
|
4.1
|
123.5
|
1.0
|
|
ND1
|
F:HIS36
|
4.2
|
122.9
|
1.0
|
|
C2B
|
F:BCL101
|
4.2
|
120.6
|
1.0
|
|
C3D
|
F:BCL101
|
4.3
|
133.9
|
1.0
|
|
C3B
|
F:BCL101
|
4.3
|
121.7
|
1.0
|
|
CG
|
F:HIS36
|
4.3
|
122.5
|
1.0
|
|
C2D
|
F:BCL101
|
4.3
|
133.1
|
1.0
|
|
C2C
|
F:BCL101
|
4.5
|
122.7
|
1.0
|
|
C3A
|
F:BCL101
|
4.5
|
126.1
|
1.0
|
|
C3C
|
F:BCL101
|
4.5
|
122.5
|
1.0
|
|
C2A
|
F:BCL101
|
4.5
|
127.8
|
1.0
|
|
CMB
|
D:BCL103
|
4.8
|
125.2
|
1.0
|
|
OBD
|
F:BCL103
|
4.9
|
123.8
|
1.0
|
|
CBD
|
F:BCL101
|
5.0
|
135.9
|
1.0
|
|
C2D
|
F:BCL103
|
5.0
|
125.4
|
1.0
|
|
CBB
|
D:BCL103
|
5.0
|
120.4
|
1.0
|
|
Magnesium binding site 10 out
of 36 in 7c52
Go back to
Magnesium Binding Sites List in 7c52
Magnesium binding site 10 out
of 36 in the Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Co-Crystal Structure of A Photosynthetic LH1-Rc in Complex with Electron Donor Hipip within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg103
b:132.8
occ:1.00
|
MG
|
F:BCL103
|
0.0
|
132.8
|
1.0
|
|
ND
|
F:BCL103
|
2.0
|
129.0
|
1.0
|
|
NB
|
F:BCL103
|
2.1
|
134.1
|
1.0
|
|
NC
|
F:BCL103
|
2.1
|
132.0
|
1.0
|
|
NA
|
F:BCL103
|
2.2
|
128.7
|
1.0
|
|
NE2
|
G:HIS36
|
2.2
|
137.5
|
1.0
|
|
C4D
|
F:BCL103
|
3.0
|
126.4
|
1.0
|
|
C4B
|
F:BCL103
|
3.1
|
134.6
|
1.0
|
|
C1B
|
F:BCL103
|
3.1
|
134.0
|
1.0
|
|
C1C
|
F:BCL103
|
3.1
|
133.7
|
1.0
|
|
C4A
|
F:BCL103
|
3.1
|
130.3
|
1.0
|
|
CE1
|
G:HIS36
|
3.1
|
137.9
|
1.0
|
|
C1D
|
F:BCL103
|
3.2
|
127.2
|
1.0
|
|
CD2
|
G:HIS36
|
3.2
|
140.0
|
1.0
|
|
C4C
|
F:BCL103
|
3.2
|
130.1
|
1.0
|
|
C1A
|
F:BCL103
|
3.2
|
127.6
|
1.0
|
|
CHC
|
F:BCL103
|
3.4
|
134.0
|
1.0
|
|
CHB
|
F:BCL103
|
3.4
|
131.9
|
1.0
|
|
CHA
|
F:BCL103
|
3.5
|
125.7
|
1.0
|
|
CHD
|
F:BCL103
|
3.5
|
127.7
|
1.0
|
|
C3D
|
F:BCL103
|
4.2
|
125.0
|
1.0
|
|
ND1
|
G:HIS36
|
4.3
|
141.4
|
1.0
|
|
C2B
|
F:BCL103
|
4.3
|
135.8
|
1.0
|
|
CG
|
G:HIS36
|
4.3
|
143.7
|
1.0
|
|
C3B
|
F:BCL103
|
4.3
|
136.1
|
1.0
|
|
C2D
|
F:BCL103
|
4.3
|
125.4
|
1.0
|
|
CMB
|
I:BCL101
|
4.4
|
126.6
|
1.0
|
|
C2C
|
F:BCL103
|
4.5
|
135.2
|
1.0
|
|
C3C
|
F:BCL103
|
4.5
|
133.1
|
1.0
|
|
C3A
|
F:BCL103
|
4.5
|
130.4
|
1.0
|
|
C2A
|
F:BCL103
|
4.5
|
130.7
|
1.0
|
|
CMD
|
F:BCL101
|
4.5
|
135.2
|
1.0
|
|
CBB
|
I:BCL101
|
4.8
|
131.9
|
1.0
|
|
CG2
|
F:ILE35
|
4.8
|
115.1
|
1.0
|
|
CBD
|
F:BCL103
|
4.9
|
125.5
|
1.0
|
|
Reference:
T.Kawakami,
L.J.Yu,
T.Liang,
K.Okazaki,
M.T.Madigan,
Y.Kimura,
Z.Y.Wang-Otomo.
Crystal Structure of A Photosynthetic LH1-Rc in Complex with Its Electron Donor Hipip. Nat Commun V. 12 1104 2021.
ISSN: ESSN 2041-1723
PubMed: 33597527
DOI: 10.1038/S41467-021-21397-9
Page generated: Wed Oct 2 13:40:17 2024
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