Magnesium in PDB 7cmy: Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate

All present enzymatic activity of Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate:
4.1.3.1;

The structure of Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate, PDB code: 7cmy was solved by K.Kim, D.Ki, S.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.28 / 2.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	94.91, 94.91, 196.156, 90, 90, 90
R / Rfree (%)	19.6 / 28.3

The binding sites of Magnesium atom in the Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate (pdb code 7cmy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate, PDB code: 7cmy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:45.5 occ:1.00 O1 C:GLV503 2.0 59.0 1.0 O3 C:GLV503 2.3 44.5 1.0 OD2 C:ASP148 2.5 32.9 1.0 C1 C:GLV503 2.9 49.0 1.0 O4 C:SIN502 2.9 58.9 1.0 C2 C:GLV503 3.0 50.5 1.0 OD2 C:ASP104 3.1 50.3 1.0 OD1 C:ASP104 3.4 42.9 1.0 NZ C:LYS184 3.4 51.1 1.0 CG C:ASP148 3.5 32.1 1.0 CG C:ASP104 3.7 45.3 1.0 OD1 C:ASP148 3.7 34.8 1.0 CE C:LYS184 3.9 48.0 1.0 C4 C:SIN502 4.0 58.0 1.0 N C:TRP89 4.1 31.8 1.0 CG C:GLU150 4.2 39.9 1.0 O2 C:GLV503 4.2 44.8 1.0 OE2 C:GLU177 4.4 43.0 1.0 CA C:GLY88 4.4 28.9 1.0 OE2 C:GLU150 4.5 38.7 1.0 N C:GLY88 4.5 30.5 1.0 C C:GLY88 4.5 28.0 1.0 C3 C:SIN502 4.5 53.5 1.0 NH1 C:ARG223 4.5 39.1 1.0 CD C:GLU150 4.6 39.0 1.0 CB C:TRP89 4.7 34.4 1.0 CA C:TRP89 4.8 30.5 1.0 CB C:ASP148 4.8 36.0 1.0

Magnesium binding site 2 out of 2 in the Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:59.5 occ:1.00 O3 A:GLV503 1.9 51.8 1.0 OD2 A:ASP148 2.2 27.9 1.0 O1 A:GLV503 2.7 66.2 1.0 C2 A:GLV503 2.9 61.6 1.0 O4 A:SIN502 3.1 78.4 1.0 CG A:ASP148 3.1 37.3 1.0 C1 A:GLV503 3.2 63.0 1.0 OD1 A:ASP148 3.4 38.9 1.0 OD1 A:ASP104 3.6 50.2 1.0 NZ A:LYS184 3.7 50.8 1.0 OD2 A:ASP104 3.8 46.0 1.0 OE2 A:GLU150 4.0 59.7 1.0 N A:TRP89 4.0 38.2 1.0 CE A:LYS184 4.0 49.3 1.0 CA A:GLY88 4.0 32.8 1.0 O2 A:GLV503 4.1 51.6 1.0 CG A:ASP104 4.1 46.4 1.0 CG A:GLU150 4.1 51.3 1.0 N A:GLY88 4.1 33.0 1.0 C4 A:SIN502 4.2 70.6 1.0 CD A:GLU150 4.3 51.5 1.0 C A:GLY88 4.3 36.1 1.0 CB A:ASP148 4.5 39.6 1.0 OE2 A:GLU177 4.6 42.8 1.0 NH1 A:ARG223 4.7 51.8 1.0 CE1 A:HIS175 4.8 41.3 1.0 C3 A:SIN502 5.0 66.8 1.0 CA A:TRP89 5.0 33.3 1.0

K.Kim, D.Ki, S.H.Lee. Isocitrate Lyase From Bacillus Cereus Atcc 14579 in Complex with Magnessium Ion, Glyoxylate, and Succinate To Be Published.