Magnesium in PDB 7d8q: The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus

The structure of The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus, PDB code: 7d8q was solved by Z.Wang, X.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.19 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.659, 36.124, 58.924, 90, 111.46, 90
R / Rfree (%)	16.4 / 18.6

The binding sites of Magnesium atom in the The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus (pdb code 7d8q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus, PDB code: 7d8q:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:11.9 occ:1.00 O A:HOH348 2.3 9.7 1.0 OD1 A:ASN90 2.3 12.0 1.0 O A:HOH329 2.4 12.2 1.0 OD2 A:ASP106 2.4 10.0 1.0 OD2 A:ASP110 2.5 12.9 1.0 O A:HOH319 2.7 11.6 1.0 CG A:ASP106 3.3 9.6 1.0 CG A:ASN90 3.4 11.1 1.0 OD1 A:ASP106 3.5 10.3 1.0 CG A:ASP110 3.6 13.4 1.0 MG A:MG203 3.8 12.3 1.0 CB A:ASN90 3.9 9.8 1.0 O11 A:GZF201 4.1 12.9 1.0 OH A:TYR88 4.1 11.7 0.9 CB A:ASP110 4.1 11.5 1.0 O A:ASP108 4.2 9.6 1.0 O A:HOH318 4.2 12.3 1.0 O A:HOH392 4.3 14.2 1.0 CA A:ASN90 4.3 9.9 1.0 O A:LEU109 4.3 9.0 1.0 CE2 A:TYR88 4.5 13.6 1.0 ND2 A:ASN90 4.5 12.6 1.0 C A:ASP108 4.6 8.6 1.0 CB A:ASP106 4.7 8.7 1.0 N A:ASP108 4.7 8.8 1.0 CZ A:TYR88 4.7 12.8 0.9 OD1 A:ASP110 4.8 15.3 1.0 CA A:ASP108 4.8 8.9 1.0 O12 A:GZF201 4.9 13.4 1.0 C A:LEU109 4.9 8.4 1.0 O A:LEU91 5.0 8.6 1.0

Magnesium binding site 2 out of 2 in the The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:12.3 occ:1.00 OD2 A:ASP123 2.3 12.0 1.0 O A:HOH319 2.3 11.6 1.0 O A:ASP108 2.4 9.6 1.0 O12 A:GZF201 2.5 13.4 1.0 OD2 A:ASP110 2.5 12.9 1.0 OE2 A:GLU126 2.7 18.0 1.0 CG A:ASP123 3.2 11.7 1.0 CG A:ASP110 3.3 13.4 1.0 OD1 A:ASP110 3.3 15.3 1.0 C A:ASP108 3.4 8.6 1.0 P10 A:GZF201 3.7 12.0 1.0 CB A:ASP123 3.7 11.4 1.0 MG A:MG202 3.8 11.9 1.0 CA A:ASP108 3.8 8.9 1.0 CD A:GLU126 3.9 19.5 1.0 O11 A:GZF201 3.9 12.9 1.0 OD1 A:ASP123 4.2 13.2 1.0 O A:HOH329 4.2 12.2 1.0 OH A:TYR88 4.5 11.7 0.9 OE1 A:GLU126 4.5 21.5 1.0 N A:LEU109 4.6 8.3 1.0 O09 A:GZF201 4.7 12.6 1.0 O A:HOH348 4.7 9.7 1.0 CB A:ASP110 4.7 11.5 1.0 CB A:ASP108 4.8 9.8 1.0 OD1 A:ASP106 4.8 10.3 1.0 N A:ASP108 4.8 8.8 1.0 C A:LEU109 4.9 8.4 1.0 N A:ASP110 5.0 8.8 1.0

Z.Wang, X.Li. The Structure of Nucleotide Phosphatase SA1684 Complex with Gdp Analogue From Staphylococcus Aureus To Be Published.