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Magnesium in PDB 7dmz: Gmpcpp Microtubule Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Gmpcpp Microtubule Complex (pdb code 7dmz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Gmpcpp Microtubule Complex, PDB code: 7dmz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7dmz

Go back to Magnesium Binding Sites List in 7dmz
Magnesium binding site 1 out of 2 in the Gmpcpp Microtubule Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gmpcpp Microtubule Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:85.8
occ:1.00
O2G A:GTP501 2.1 83.9 1.0
O3G A:GTP501 2.1 83.9 1.0
O1B A:GTP501 2.1 83.9 1.0
PG A:GTP501 2.4 83.9 1.0
PB A:GTP501 3.1 83.9 1.0
O3B A:GTP501 3.1 83.9 1.0
OE1 A:GLN11 3.3 80.2 1.0
OE2 A:GLU71 3.6 86.0 1.0
O3A A:GTP501 3.8 83.9 1.0
O1G A:GTP501 3.8 83.9 1.0
CB A:GLN11 4.2 80.2 1.0
O2B A:GTP501 4.4 83.9 1.0
CD A:GLN11 4.4 80.2 1.0
CD A:GLU71 4.8 86.0 1.0
O1A A:GTP501 4.8 83.9 1.0
CG A:GLN11 4.9 80.2 1.0
PA A:GTP501 4.9 83.9 1.0
CG2 A:THR145 4.9 74.4 1.0

Magnesium binding site 2 out of 2 in 7dmz

Go back to Magnesium Binding Sites List in 7dmz
Magnesium binding site 2 out of 2 in the Gmpcpp Microtubule Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gmpcpp Microtubule Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:67.7
occ:1.00
O1B B:GTP501 2.1 62.1 1.0
O2G B:GTP501 2.1 62.1 1.0
O3B B:GTP501 2.1 62.1 1.0
PG B:GTP501 2.4 62.1 1.0
PB B:GTP501 2.5 62.1 1.0
CG2 B:THR145 2.5 59.5 1.0
O3G B:GTP501 3.0 62.1 1.0
O2B B:GTP501 3.3 62.1 1.0
O1G B:GTP501 3.8 62.1 1.0
O3A B:GTP501 3.9 62.1 1.0
CB B:THR145 4.0 59.5 1.0
OD1 B:ASP69 4.0 61.5 1.0
OD2 B:ASP69 4.1 61.5 1.0
N B:GLN11 4.3 58.3 1.0
CG B:ASP69 4.5 61.5 1.0
CB B:GLN11 4.5 58.3 1.0
N B:THR145 4.5 59.5 1.0
CA B:GLY10 4.8 62.6 1.0
N B:GLY146 4.8 60.8 1.0
CA B:THR145 4.8 59.5 1.0
OG1 B:THR145 4.8 59.5 1.0
O2A B:GTP501 4.9 62.1 1.0
PA B:GTP501 4.9 62.1 1.0
C B:GLY10 5.0 62.6 1.0
CA B:GLN11 5.0 58.3 1.0

Reference:

Y.X.Wang, Y.X.Wang. N/A N/A.
Page generated: Wed Oct 2 15:55:30 2024

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