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Magnesium in PDB 7drp: Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Protein crystallography data
The structure of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp, PDB code: 7drp
was solved by
I.Song,
J.Yu,
W.Song,
S.Kim,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 33.19 / 2.98 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 89.587, 91.656, 98.198, 90, 101.31, 90 |
| R / Rfree (%) | 20.7 / 21 |
Other elements in 7drp:
The structure of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp also contains other interesting chemical elements:
| Fluorine | (F) | 2 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
(pdb code 7drp). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp, PDB code: 7drp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Magnesium where determined in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp, PDB code: 7drp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Magnesium binding site 1 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 1 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Magnesium binding site 2 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 2 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Magnesium binding site 3 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 3 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Magnesium binding site 4 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 4 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Magnesium binding site 5 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 5 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Magnesium binding site 6 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 6 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Magnesium binding site 7 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 7 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Magnesium binding site 8 out of 8 in 7drp
Go back to
Magnesium Binding Sites List in 7drp
Magnesium binding site 8 out
of 8 in the Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Atp-Grasp Ligase Psnb Complexed with Phosphomimetic Variant of Minimal Precursor, Mg, and Adp within 5.0Å range:
|
Reference:
I.Song,
Y.Kim,
J.Yu,
S.Go,
H.Lee,
W.Song,
S.Kim.
Molecular Mechanism Underlying Substrate Recognition of the Peptide Macrocyclase Psnb To Be Published.
Page generated: Wed Oct 2 16:01:13 2024
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