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Magnesium in PDB 7e1g: Structure of MREB3 From Spiroplasma Eriocheiris

Protein crystallography data

The structure of Structure of MREB3 From Spiroplasma Eriocheiris, PDB code: 7e1g was solved by D.Takahashi, M.Miyata, K.Imada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.99 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.29, 56.27, 120.531, 90, 90.56, 90
R / Rfree (%) 17.4 / 21.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of MREB3 From Spiroplasma Eriocheiris (pdb code 7e1g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of MREB3 From Spiroplasma Eriocheiris, PDB code: 7e1g:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7e1g

Go back to Magnesium Binding Sites List in 7e1g
Magnesium binding site 1 out of 2 in the Structure of MREB3 From Spiroplasma Eriocheiris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of MREB3 From Spiroplasma Eriocheiris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:19.8
occ:1.00
O A:HOH730 2.0 16.7 1.0
O2B A:ANP502 2.0 13.4 1.0
O1G A:ANP502 2.1 22.8 1.0
O A:HOH674 2.1 15.1 1.0
O A:HOH803 2.2 18.3 1.0
O A:HOH805 2.3 18.1 1.0
PG A:ANP502 3.3 20.4 1.0
PB A:ANP502 3.3 15.4 1.0
N3B A:ANP502 3.8 17.2 1.0
O3G A:ANP502 3.8 20.8 1.0
O A:HOH744 3.9 21.7 1.0
O A:HOH788 4.0 22.2 1.0
O1A A:ANP502 4.0 14.4 1.0
O3A A:ANP502 4.2 18.1 1.0
OD2 A:ASP147 4.2 21.2 1.0
O A:HOH735 4.3 16.9 1.0
OD1 A:ASP169 4.3 14.9 1.0
O A:HOH715 4.3 18.7 1.0
O1B A:ANP502 4.4 17.0 1.0
OD2 A:ASP169 4.5 23.8 1.0
O2G A:ANP502 4.6 17.2 1.0
O A:HOH742 4.7 30.8 1.0
PA A:ANP502 4.7 14.9 1.0
OD1 A:ASP25 4.7 16.4 1.0
CG A:ASP169 4.8 17.7 1.0
CG2 A:VAL329 4.9 16.3 1.0
O A:HOH782 4.9 28.1 1.0
CA A:GLY27 4.9 12.9 1.0
O A:HOH822 5.0 21.4 1.0

Magnesium binding site 2 out of 2 in 7e1g

Go back to Magnesium Binding Sites List in 7e1g
Magnesium binding site 2 out of 2 in the Structure of MREB3 From Spiroplasma Eriocheiris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of MREB3 From Spiroplasma Eriocheiris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:23.7
occ:1.00
O2B B:ANP502 2.0 17.9 1.0
O B:HOH689 2.1 25.6 1.0
O B:HOH675 2.1 19.0 1.0
O B:HOH717 2.1 20.5 1.0
O1G B:ANP502 2.2 25.3 1.0
O B:HOH753 2.3 24.2 1.0
PB B:ANP502 3.4 19.5 1.0
PG B:ANP502 3.4 26.9 1.0
O B:HOH751 3.7 24.6 1.0
O3G B:ANP502 3.9 28.5 1.0
N3B B:ANP502 3.9 23.9 1.0
O1A B:ANP502 4.1 14.4 1.0
O B:HOH691 4.1 20.3 1.0
O B:HOH748 4.1 20.7 1.0
OD2 B:ASP147 4.2 25.4 1.0
O3A B:ANP502 4.2 19.6 1.0
OD2 B:ASP169 4.2 33.9 1.0
OD1 B:ASP169 4.2 20.3 1.0
O B:HOH673 4.4 35.3 1.0
O1B B:ANP502 4.5 20.6 1.0
OD1 B:ASP25 4.5 17.4 1.0
O B:HOH617 4.5 24.7 1.0
CG B:ASP169 4.6 23.4 1.0
CG2 B:VAL329 4.7 17.9 1.0
PA B:ANP502 4.7 18.3 1.0
O2G B:ANP502 4.7 25.4 1.0
O B:HOH747 4.9 26.9 1.0
OD2 B:ASP25 4.9 25.6 1.0
CG B:ASP147 5.0 21.6 1.0
CA B:GLY27 5.0 19.0 1.0

Reference:

D.Takahashi, I.Fujiwara, A.Narita, K.Imada, M.Miyata. Structures and Dynamics of Mreb Proteins Involved in Swimming Motility of Spiroplasma Eriocheiris To Be Published.
Page generated: Wed Oct 2 17:44:42 2024

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