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Magnesium in PDB 7esc: Fmnb Complexed with Amp

Enzymatic activity of Fmnb Complexed with Amp

All present enzymatic activity of Fmnb Complexed with Amp:
2.7.1.180;

Protein crystallography data

The structure of Fmnb Complexed with Amp, PDB code: 7esc was solved by W.Cheng, Y.H.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.46 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.875, 67.872, 97.003, 90, 90, 90
R / Rfree (%) 24.5 / 28.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fmnb Complexed with Amp (pdb code 7esc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Fmnb Complexed with Amp, PDB code: 7esc:

Magnesium binding site 1 out of 1 in 7esc

Go back to Magnesium Binding Sites List in 7esc
Magnesium binding site 1 out of 1 in the Fmnb Complexed with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fmnb Complexed with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:58.6
occ:1.00
O1P A:AMP401 2.2 136.9 1.0
O A:ALA187 2.6 34.6 1.0
HB1 A:ALA187 2.8 39.3 1.0
HA A:ALA187 2.9 38.5 1.0
P A:AMP401 3.1 140.7 1.0
HB2 A:SER304 3.2 37.2 1.0
O A:ASP301 3.2 40.5 1.0
O5' A:AMP401 3.3 100.3 1.0
OD1 A:ASP301 3.3 51.5 1.0
CA A:ALA187 3.4 39.0 1.0
O2P A:AMP401 3.4 136.3 1.0
C A:ALA187 3.4 37.9 1.0
O A:HOH512 3.5 35.7 1.0
CB A:ALA187 3.5 39.6 1.0
HA A:ASP301 3.5 43.3 1.0
CG A:ASP301 3.9 47.0 1.0
HB3 A:ASP301 3.9 45.3 1.0
C A:ASP301 4.0 42.1 1.0
HB2 A:ALA187 4.0 39.7 1.0
CA A:ASP301 4.0 43.3 1.0
CB A:SER304 4.1 36.0 1.0
HG A:SER304 4.1 30.0 0.0
CB A:ASP301 4.1 45.4 1.0
HB3 A:SER304 4.2 37.4 1.0
HB3 A:ALA187 4.3 39.7 1.0
OG1 A:THR305 4.4 45.8 1.0
HE1 A:PHE127 4.5 44.1 1.0
OG A:SER304 4.5 38.7 1.0
O3P A:AMP401 4.5 124.6 1.0
HG1 A:THR305 4.6 30.0 0.0
C5' A:AMP401 4.6 70.5 1.0
H A:THR305 4.7 42.5 1.0
N A:ILE188 4.7 37.4 1.0
OD2 A:ASP301 4.7 51.7 1.0
N A:ALA187 4.8 37.6 1.0
H A:SER304 4.8 40.6 1.0
H5'2 A:AMP401 4.8 73.3 1.0
O A:HOH508 4.9 47.0 1.0
HA A:ILE188 4.9 36.3 1.0
O A:HOH504 4.9 66.0 1.0

Reference:

W.Cheng, Y.H.Zheng. Structure of Fmnb Complexed with Amp To Be Published.
Page generated: Wed Oct 2 20:58:12 2024

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