Magnesium in PDB 7esq: Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy

The structure of Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy, PDB code: 7esq was solved by C.Y.Zhang, T.C.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.13 / 1.85
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	170.26, 170.26, 170.26, 90, 90, 90
R / Rfree (%)	18.6 / 20.4

The binding sites of Magnesium atom in the Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy (pdb code 7esq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy, PDB code: 7esq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:37.3 occ:1.00 O11 A:PPV402 2.1 36.7 1.0 O12 A:PPV402 2.1 37.1 1.0 O A:HOH528 2.1 38.4 1.0 O A:HOH517 2.1 37.3 1.0 OG A:SER151 2.2 40.6 1.0 O A:HOH526 2.2 36.9 1.0 CB A:SER151 3.2 40.0 1.0 P1 A:PPV402 3.3 39.6 1.0 P2 A:PPV402 3.3 41.5 1.0 OPP A:PPV402 3.6 40.0 1.0 N A:SER151 4.0 36.8 1.0 O31 A:PPV402 4.0 39.4 1.0 O32 A:PPV402 4.1 38.1 1.0 CA A:SER151 4.1 38.1 1.0 OE2 A:GLU167 4.2 38.2 1.0 OD2 A:ASP204 4.2 38.9 1.0 OD1 A:ASP204 4.2 36.6 1.0 O A:HOH545 4.2 46.9 1.0 O B:HOH607 4.3 51.0 1.0 OE1 A:GLU170 4.3 47.5 1.0 OE2 A:GLU170 4.4 44.6 1.0 O21 A:PPV402 4.4 37.8 1.0 O A:HOH523 4.5 43.3 1.0 O22 A:PPV402 4.5 43.0 1.0 CD A:GLU167 4.6 40.3 1.0 O A:HOH560 4.6 39.7 1.0 CG A:ASP204 4.7 37.9 1.0 CD A:GLU170 4.8 48.1 1.0 O A:HOH515 4.9 51.1 1.0 NH1 A:ARG164 4.9 40.7 1.0

Magnesium binding site 2 out of 2 in the Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:38.9 occ:1.00 O21 B:PPV402 2.1 41.0 1.0 O B:HOH508 2.1 35.8 1.0 O B:HOH510 2.1 40.4 1.0 O B:HOH540 2.2 38.8 1.0 O22 B:PPV402 2.2 41.8 1.0 OG B:SER151 2.2 39.8 1.0 CB B:SER151 3.2 37.9 1.0 P1 B:PPV402 3.3 40.6 1.0 P2 B:PPV402 3.3 44.3 1.0 OPP B:PPV402 3.5 40.8 1.0 N B:SER151 4.0 37.5 1.0 O12 B:PPV402 4.0 42.5 1.0 O31 B:PPV402 4.1 41.2 1.0 OE1 B:GLU167 4.1 37.0 1.0 CA B:SER151 4.2 39.8 1.0 OD1 B:ASP204 4.2 36.3 1.0 OD2 B:ASP204 4.3 34.9 1.0 OE2 B:GLU170 4.3 39.5 1.0 O B:HOH538 4.4 46.0 1.0 OE1 B:GLU170 4.4 44.9 1.0 O11 B:PPV402 4.5 39.2 1.0 CD B:GLU167 4.5 38.8 1.0 O32 B:PPV402 4.5 45.7 1.0 O B:HOH507 4.5 47.4 1.0 O B:HOH606 4.6 46.6 1.0 O B:HOH521 4.7 41.3 1.0 CG B:ASP204 4.7 37.8 1.0 OE2 B:GLU167 4.7 38.6 1.0 O B:HOH502 4.8 47.9 1.0 CD B:GLU170 4.8 45.6 1.0 NH1 B:ARG164 4.9 36.3 1.0

C.Zhang, Y.Li, A.Samad, P.Zheng, Z.Ji, F.Chen, H.Zhang, T.Jin. Structure and Mutation Analysis of the Hexameric P4 From Pseudomonas Aeruginosa Phage Phiyy. Int.J.Biol.Macromol. V. 194 42 2022.
ISSN: ISSN 0141-8130
PubMed: 34856215
DOI: 10.1016/J.IJBIOMAC.2021.11.129