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Magnesium in PDB 7eze: Thorarchaeota Rab Gtp-Gamma-S/MG2+ (Soak)

Protein crystallography data

The structure of Thorarchaeota Rab Gtp-Gamma-S/MG2+ (Soak), PDB code: 7eze was solved by R.C.Robinson, L.T.Tran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.96 / 1.95
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 69.133, 69.133, 66.927, 90, 90, 120
R / Rfree (%) 16.6 / 20.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Thorarchaeota Rab Gtp-Gamma-S/MG2+ (Soak) (pdb code 7eze). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Thorarchaeota Rab Gtp-Gamma-S/MG2+ (Soak), PDB code: 7eze:

Magnesium binding site 1 out of 1 in 7eze

Go back to Magnesium Binding Sites List in 7eze
Magnesium binding site 1 out of 1 in the Thorarchaeota Rab Gtp-Gamma-S/MG2+ (Soak)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Thorarchaeota Rab Gtp-Gamma-S/MG2+ (Soak) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:33.0
occ:1.00
O2B A:GSP301 2.0 25.8 1.0
O A:HOH431 2.1 29.2 1.0
OG1 A:THR20 2.2 30.9 1.0
O A:HOH421 2.2 33.3 1.0
O3G A:GSP301 2.3 43.7 1.0
O A:HOH487 2.3 36.1 1.0
PG A:GSP301 3.0 45.3 1.0
O2G A:GSP301 3.2 56.4 1.0
PB A:GSP301 3.2 28.6 1.0
CB A:THR20 3.3 24.7 1.0
O3B A:GSP301 3.4 41.1 1.0
N A:THR20 4.0 24.4 1.0
O1A A:GSP301 4.0 30.2 1.0
O1B A:GSP301 4.1 31.6 1.0
OD2 A:ASP63 4.1 42.4 1.0
O A:HOH410 4.2 56.1 1.0
CA A:THR20 4.2 22.0 1.0
O3A A:GSP301 4.3 28.1 1.0
CG2 A:THR20 4.3 25.7 1.0
OD1 A:ASP63 4.5 40.2 1.0
PA A:GSP301 4.5 26.4 1.0
O2A A:GSP301 4.6 28.1 1.0
S1G A:GSP301 4.6 66.5 1.0
CG A:ASP63 4.7 40.3 1.0

Reference:

R.C.Robinson, L.T.Tran. Structure of Thor-Rab To Be Published.
Page generated: Wed Oct 2 21:04:34 2024

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