Magnesium in PDB 7f0l: Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
Other elements in 7f0l:
The structure of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
32;
Binding sites:
The binding sites of Magnesium atom in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
(pdb code 7f0l). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 32 binding sites of Magnesium where determined in the
Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer, PDB code: 7f0l:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 1 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:28.7
occ:1.00
|
MG
|
L:BCL301
|
0.0
|
28.7
|
1.0
|
|
NC
|
L:BCL301
|
2.0
|
28.7
|
1.0
|
|
NA
|
L:BCL301
|
2.0
|
28.7
|
1.0
|
|
ND
|
L:BCL301
|
2.0
|
28.7
|
1.0
|
|
NB
|
L:BCL301
|
2.1
|
28.7
|
1.0
|
|
NE2
|
L:HIS173
|
2.2
|
15.1
|
1.0
|
|
CE1
|
L:HIS173
|
2.7
|
15.1
|
1.0
|
|
C4D
|
L:BCL301
|
3.0
|
28.7
|
1.0
|
|
C4C
|
L:BCL301
|
3.0
|
28.7
|
1.0
|
|
C4A
|
L:BCL301
|
3.0
|
28.7
|
1.0
|
|
C1C
|
L:BCL301
|
3.0
|
28.7
|
1.0
|
|
C1A
|
L:BCL301
|
3.0
|
28.7
|
1.0
|
|
C1B
|
L:BCL301
|
3.1
|
28.7
|
1.0
|
|
C4B
|
L:BCL301
|
3.1
|
28.7
|
1.0
|
|
C1D
|
L:BCL301
|
3.2
|
28.7
|
1.0
|
|
CHC
|
L:BCL301
|
3.4
|
28.7
|
1.0
|
|
CHB
|
L:BCL301
|
3.4
|
28.7
|
1.0
|
|
CHA
|
L:BCL301
|
3.4
|
28.7
|
1.0
|
|
CHD
|
L:BCL301
|
3.5
|
28.7
|
1.0
|
|
CD2
|
L:HIS173
|
3.5
|
15.1
|
1.0
|
|
CBB
|
M:BCL803
|
3.8
|
14.8
|
1.0
|
|
CAB
|
M:BCL803
|
3.8
|
14.8
|
1.0
|
|
OBB
|
M:BCL803
|
3.9
|
14.8
|
1.0
|
|
ND1
|
L:HIS173
|
4.0
|
15.1
|
1.0
|
|
C3D
|
L:BCL301
|
4.2
|
28.7
|
1.0
|
|
C3A
|
L:BCL301
|
4.3
|
28.7
|
1.0
|
|
C3C
|
L:BCL301
|
4.3
|
28.7
|
1.0
|
|
C2C
|
L:BCL301
|
4.3
|
28.7
|
1.0
|
|
C2A
|
L:BCL301
|
4.3
|
28.7
|
1.0
|
|
CG
|
L:HIS173
|
4.4
|
15.1
|
1.0
|
|
C3B
|
L:BCL301
|
4.4
|
28.7
|
1.0
|
|
C2B
|
L:BCL301
|
4.4
|
28.7
|
1.0
|
|
C2D
|
L:BCL301
|
4.4
|
28.7
|
1.0
|
|
C3B
|
M:BCL803
|
4.5
|
14.8
|
1.0
|
|
CD2
|
L:PHE167
|
4.8
|
12.2
|
1.0
|
|
CMA
|
L:BCL301
|
4.8
|
28.7
|
1.0
|
|
CBD
|
L:BCL301
|
4.9
|
28.7
|
1.0
|
|
CD1
|
L:ILE177
|
4.9
|
12.8
|
1.0
|
|
Magnesium binding site 2 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 2 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg308
b:28.7
occ:1.00
|
MG
|
L:BCL308
|
0.0
|
28.7
|
1.0
|
|
NA
|
L:BCL308
|
2.0
|
28.7
|
1.0
|
|
NC
|
L:BCL308
|
2.0
|
28.7
|
1.0
|
|
ND
|
L:BCL308
|
2.0
|
28.7
|
1.0
|
|
NB
|
L:BCL308
|
2.0
|
28.7
|
1.0
|
|
NE2
|
L:HIS153
|
2.3
|
15.0
|
1.0
|
|
C4D
|
L:BCL308
|
2.9
|
28.7
|
1.0
|
|
C1A
|
L:BCL308
|
3.0
|
28.7
|
1.0
|
|
C4A
|
L:BCL308
|
3.0
|
28.7
|
1.0
|
|
C4C
|
L:BCL308
|
3.0
|
28.7
|
1.0
|
|
C1C
|
L:BCL308
|
3.0
|
28.7
|
1.0
|
|
C1B
|
L:BCL308
|
3.0
|
28.7
|
1.0
|
|
C4B
|
L:BCL308
|
3.1
|
28.7
|
1.0
|
|
CD2
|
L:HIS153
|
3.1
|
15.0
|
1.0
|
|
C1D
|
L:BCL308
|
3.2
|
28.7
|
1.0
|
|
CE1
|
L:HIS153
|
3.3
|
15.0
|
1.0
|
|
CHB
|
L:BCL308
|
3.3
|
28.7
|
1.0
|
|
CHC
|
L:BCL308
|
3.4
|
28.7
|
1.0
|
|
CHA
|
L:BCL308
|
3.4
|
28.7
|
1.0
|
|
CHD
|
L:BCL308
|
3.5
|
28.7
|
1.0
|
|
C3D
|
L:BCL308
|
4.2
|
28.7
|
1.0
|
|
CG
|
L:HIS153
|
4.3
|
15.0
|
1.0
|
|
C2A
|
L:BCL308
|
4.3
|
28.7
|
1.0
|
|
C2C
|
L:BCL308
|
4.3
|
28.7
|
1.0
|
|
C3A
|
L:BCL308
|
4.3
|
28.7
|
1.0
|
|
C3C
|
L:BCL308
|
4.3
|
28.7
|
1.0
|
|
ND1
|
L:HIS153
|
4.4
|
15.0
|
1.0
|
|
C3B
|
L:BCL308
|
4.4
|
28.7
|
1.0
|
|
C2B
|
L:BCL308
|
4.4
|
28.7
|
1.0
|
|
C2D
|
L:BCL308
|
4.4
|
28.7
|
1.0
|
|
OBB
|
L:BPH302
|
4.5
|
12.2
|
1.0
|
|
CBA
|
L:BCL308
|
4.6
|
28.7
|
1.0
|
|
C20
|
L:BPH302
|
4.8
|
12.2
|
1.0
|
|
CE2
|
M:TYR210
|
4.8
|
13.9
|
1.0
|
|
CBD
|
L:BCL308
|
4.9
|
28.7
|
1.0
|
|
CMC
|
L:BCL308
|
4.9
|
28.7
|
1.0
|
|
Magnesium binding site 3 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 3 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg309
b:9.8
occ:1.00
|
MG
|
L:BCL309
|
0.0
|
9.8
|
1.0
|
|
NC
|
L:BCL309
|
2.0
|
9.8
|
1.0
|
|
NA
|
L:BCL309
|
2.0
|
9.8
|
1.0
|
|
ND
|
L:BCL309
|
2.0
|
9.8
|
1.0
|
|
NB
|
L:BCL309
|
2.0
|
9.8
|
1.0
|
|
NE2
|
M:HIS182
|
2.2
|
10.6
|
1.0
|
|
C4D
|
L:BCL309
|
2.9
|
9.8
|
1.0
|
|
C1A
|
L:BCL309
|
3.0
|
9.8
|
1.0
|
|
C4A
|
L:BCL309
|
3.0
|
9.8
|
1.0
|
|
C4C
|
L:BCL309
|
3.0
|
9.8
|
1.0
|
|
C1C
|
L:BCL309
|
3.0
|
9.8
|
1.0
|
|
C1B
|
L:BCL309
|
3.0
|
9.8
|
1.0
|
|
CD2
|
M:HIS182
|
3.0
|
10.6
|
1.0
|
|
C4B
|
L:BCL309
|
3.1
|
9.8
|
1.0
|
|
C1D
|
L:BCL309
|
3.2
|
9.8
|
1.0
|
|
CE1
|
M:HIS182
|
3.3
|
10.6
|
1.0
|
|
CHB
|
L:BCL309
|
3.3
|
9.8
|
1.0
|
|
CHC
|
L:BCL309
|
3.4
|
9.8
|
1.0
|
|
CHA
|
L:BCL309
|
3.4
|
9.8
|
1.0
|
|
CHD
|
L:BCL309
|
3.5
|
9.8
|
1.0
|
|
C3D
|
L:BCL309
|
4.2
|
9.8
|
1.0
|
|
CG
|
M:HIS182
|
4.3
|
10.6
|
1.0
|
|
C3C
|
L:BCL309
|
4.3
|
9.8
|
1.0
|
|
C2A
|
L:BCL309
|
4.3
|
9.8
|
1.0
|
|
C3A
|
L:BCL309
|
4.3
|
9.8
|
1.0
|
|
C2C
|
L:BCL309
|
4.3
|
9.8
|
1.0
|
|
ND1
|
M:HIS182
|
4.4
|
10.6
|
1.0
|
|
C3B
|
L:BCL309
|
4.4
|
9.8
|
1.0
|
|
C2B
|
L:BCL309
|
4.4
|
9.8
|
1.0
|
|
C2D
|
L:BCL309
|
4.4
|
9.8
|
1.0
|
|
CBA
|
L:BCL309
|
4.6
|
9.8
|
1.0
|
|
OBB
|
M:BPH804
|
4.7
|
12.3
|
1.0
|
|
CBD
|
L:BCL309
|
4.9
|
9.8
|
1.0
|
|
Magnesium binding site 4 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 4 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg803
b:14.8
occ:1.00
|
MG
|
M:BCL803
|
0.0
|
14.8
|
1.0
|
|
NA
|
M:BCL803
|
2.0
|
14.8
|
1.0
|
|
NC
|
M:BCL803
|
2.0
|
14.8
|
1.0
|
|
ND
|
M:BCL803
|
2.0
|
14.8
|
1.0
|
|
NB
|
M:BCL803
|
2.0
|
14.8
|
1.0
|
|
NE2
|
M:HIS202
|
2.1
|
11.4
|
1.0
|
|
CE1
|
M:HIS202
|
2.9
|
11.4
|
1.0
|
|
C4D
|
M:BCL803
|
2.9
|
14.8
|
1.0
|
|
C4A
|
M:BCL803
|
3.0
|
14.8
|
1.0
|
|
C1A
|
M:BCL803
|
3.0
|
14.8
|
1.0
|
|
C4C
|
M:BCL803
|
3.0
|
14.8
|
1.0
|
|
C1C
|
M:BCL803
|
3.0
|
14.8
|
1.0
|
|
C1B
|
M:BCL803
|
3.0
|
14.8
|
1.0
|
|
C4B
|
M:BCL803
|
3.1
|
14.8
|
1.0
|
|
C1D
|
M:BCL803
|
3.2
|
14.8
|
1.0
|
|
CD2
|
M:HIS202
|
3.3
|
11.4
|
1.0
|
|
CHB
|
M:BCL803
|
3.3
|
14.8
|
1.0
|
|
CHC
|
M:BCL803
|
3.4
|
14.8
|
1.0
|
|
CHA
|
M:BCL803
|
3.4
|
14.8
|
1.0
|
|
CHD
|
M:BCL803
|
3.5
|
14.8
|
1.0
|
|
CAB
|
L:BCL301
|
3.8
|
28.7
|
1.0
|
|
OBB
|
L:BCL301
|
3.8
|
28.7
|
1.0
|
|
CBB
|
L:BCL301
|
3.8
|
28.7
|
1.0
|
|
ND1
|
M:HIS202
|
4.1
|
11.4
|
1.0
|
|
C3D
|
M:BCL803
|
4.2
|
14.8
|
1.0
|
|
C3A
|
M:BCL803
|
4.3
|
14.8
|
1.0
|
|
C2A
|
M:BCL803
|
4.3
|
14.8
|
1.0
|
|
CG
|
M:HIS202
|
4.3
|
11.4
|
1.0
|
|
C3C
|
M:BCL803
|
4.3
|
14.8
|
1.0
|
|
C2C
|
M:BCL803
|
4.3
|
14.8
|
1.0
|
|
C3B
|
M:BCL803
|
4.4
|
14.8
|
1.0
|
|
C2B
|
M:BCL803
|
4.4
|
14.8
|
1.0
|
|
C2D
|
M:BCL803
|
4.4
|
14.8
|
1.0
|
|
C3B
|
L:BCL301
|
4.5
|
28.7
|
1.0
|
|
CD1
|
M:ILE206
|
4.8
|
12.1
|
1.0
|
|
CBD
|
M:BCL803
|
4.9
|
14.8
|
1.0
|
|
Magnesium binding site 5 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 5 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg703
b:32.4
occ:1.00
|
MG
|
A:BCL703
|
0.0
|
32.4
|
1.0
|
|
NC
|
A:BCL703
|
2.0
|
32.4
|
1.0
|
|
NA
|
A:BCL703
|
2.0
|
32.4
|
1.0
|
|
ND
|
A:BCL703
|
2.0
|
32.4
|
1.0
|
|
NB
|
A:BCL703
|
2.0
|
32.4
|
1.0
|
|
NE2
|
A:HIS32
|
2.6
|
25.6
|
1.0
|
|
C4D
|
A:BCL703
|
2.9
|
32.4
|
1.0
|
|
C4A
|
A:BCL703
|
3.0
|
32.4
|
1.0
|
|
C4C
|
A:BCL703
|
3.0
|
32.4
|
1.0
|
|
C1C
|
A:BCL703
|
3.0
|
32.4
|
1.0
|
|
C1A
|
A:BCL703
|
3.0
|
32.4
|
1.0
|
|
C1B
|
A:BCL703
|
3.0
|
32.4
|
1.0
|
|
C4B
|
A:BCL703
|
3.1
|
32.4
|
1.0
|
|
C1D
|
A:BCL703
|
3.2
|
32.4
|
1.0
|
|
CHB
|
A:BCL703
|
3.3
|
32.4
|
1.0
|
|
CHC
|
A:BCL703
|
3.4
|
32.4
|
1.0
|
|
CE1
|
A:HIS32
|
3.4
|
25.6
|
1.0
|
|
CHA
|
A:BCL703
|
3.4
|
32.4
|
1.0
|
|
CHD
|
A:BCL703
|
3.5
|
32.4
|
1.0
|
|
CD2
|
A:HIS32
|
3.6
|
25.6
|
1.0
|
|
C3D
|
A:BCL703
|
4.2
|
32.4
|
1.0
|
|
C3A
|
A:BCL703
|
4.3
|
32.4
|
1.0
|
|
C2C
|
A:BCL703
|
4.3
|
32.4
|
1.0
|
|
C2A
|
A:BCL703
|
4.3
|
32.4
|
1.0
|
|
C3C
|
A:BCL703
|
4.3
|
32.4
|
1.0
|
|
C3B
|
A:BCL703
|
4.4
|
32.4
|
1.0
|
|
C2B
|
A:BCL703
|
4.4
|
32.4
|
1.0
|
|
C2D
|
A:BCL703
|
4.4
|
32.4
|
1.0
|
|
ND1
|
A:HIS32
|
4.6
|
25.6
|
1.0
|
|
CMD
|
B:BCL101
|
4.7
|
26.1
|
1.0
|
|
CG
|
A:HIS32
|
4.7
|
25.6
|
1.0
|
|
CBD
|
A:BCL703
|
4.9
|
32.4
|
1.0
|
|
OBD
|
B:BCL101
|
5.0
|
26.1
|
1.0
|
|
Magnesium binding site 6 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 6 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg101
b:26.1
occ:1.00
|
MG
|
B:BCL101
|
0.0
|
26.1
|
1.0
|
|
NC
|
B:BCL101
|
2.0
|
26.1
|
1.0
|
|
NA
|
B:BCL101
|
2.0
|
26.1
|
1.0
|
|
ND
|
B:BCL101
|
2.0
|
26.1
|
1.0
|
|
NB
|
B:BCL101
|
2.0
|
26.1
|
1.0
|
|
NE2
|
B:HIS38
|
2.2
|
25.4
|
1.0
|
|
C4D
|
B:BCL101
|
2.9
|
26.1
|
1.0
|
|
C4A
|
B:BCL101
|
3.0
|
26.1
|
1.0
|
|
C4C
|
B:BCL101
|
3.0
|
26.1
|
1.0
|
|
C1A
|
B:BCL101
|
3.0
|
26.1
|
1.0
|
|
C1C
|
B:BCL101
|
3.0
|
26.1
|
1.0
|
|
C4B
|
B:BCL101
|
3.1
|
26.1
|
1.0
|
|
C1B
|
B:BCL101
|
3.1
|
26.1
|
1.0
|
|
CD2
|
B:HIS38
|
3.1
|
25.4
|
1.0
|
|
C1D
|
B:BCL101
|
3.1
|
26.1
|
1.0
|
|
CE1
|
B:HIS38
|
3.2
|
25.4
|
1.0
|
|
CHB
|
B:BCL101
|
3.4
|
26.1
|
1.0
|
|
CHC
|
B:BCL101
|
3.4
|
26.1
|
1.0
|
|
CHA
|
B:BCL101
|
3.4
|
26.1
|
1.0
|
|
CHD
|
B:BCL101
|
3.5
|
26.1
|
1.0
|
|
C3D
|
B:BCL101
|
4.2
|
26.1
|
1.0
|
|
CMB
|
D:BCL101
|
4.2
|
23.9
|
1.0
|
|
CG
|
B:HIS38
|
4.3
|
25.4
|
1.0
|
|
ND1
|
B:HIS38
|
4.3
|
25.4
|
1.0
|
|
C2A
|
B:BCL101
|
4.3
|
26.1
|
1.0
|
|
C3A
|
B:BCL101
|
4.3
|
26.1
|
1.0
|
|
C3C
|
B:BCL101
|
4.3
|
26.1
|
1.0
|
|
C2C
|
B:BCL101
|
4.3
|
26.1
|
1.0
|
|
C3B
|
B:BCL101
|
4.4
|
26.1
|
1.0
|
|
C2D
|
B:BCL101
|
4.4
|
26.1
|
1.0
|
|
C2B
|
B:BCL101
|
4.4
|
26.1
|
1.0
|
|
CBB
|
D:BCL101
|
4.8
|
23.9
|
1.0
|
|
C2B
|
D:BCL101
|
4.8
|
23.9
|
1.0
|
|
CD1
|
A:ILE31
|
4.9
|
24.3
|
1.0
|
|
CBD
|
B:BCL101
|
4.9
|
26.1
|
1.0
|
|
CMD
|
A:BCL703
|
5.0
|
32.4
|
1.0
|
|
Magnesium binding site 7 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 7 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:23.9
occ:1.00
|
MG
|
D:BCL101
|
0.0
|
23.9
|
1.0
|
|
NA
|
D:BCL101
|
2.0
|
23.9
|
1.0
|
|
NC
|
D:BCL101
|
2.0
|
23.9
|
1.0
|
|
ND
|
D:BCL101
|
2.0
|
23.9
|
1.0
|
|
NB
|
D:BCL101
|
2.0
|
23.9
|
1.0
|
|
NE2
|
D:HIS32
|
2.5
|
17.9
|
1.0
|
|
C4D
|
D:BCL101
|
2.9
|
23.9
|
1.0
|
|
C4A
|
D:BCL101
|
3.0
|
23.9
|
1.0
|
|
C1A
|
D:BCL101
|
3.0
|
23.9
|
1.0
|
|
C4C
|
D:BCL101
|
3.0
|
23.9
|
1.0
|
|
C1C
|
D:BCL101
|
3.0
|
23.9
|
1.0
|
|
C1B
|
D:BCL101
|
3.0
|
23.9
|
1.0
|
|
C4B
|
D:BCL101
|
3.1
|
23.9
|
1.0
|
|
CE1
|
D:HIS32
|
3.1
|
17.9
|
1.0
|
|
C1D
|
D:BCL101
|
3.2
|
23.9
|
1.0
|
|
CHB
|
D:BCL101
|
3.3
|
23.9
|
1.0
|
|
CHC
|
D:BCL101
|
3.4
|
23.9
|
1.0
|
|
CHA
|
D:BCL101
|
3.4
|
23.9
|
1.0
|
|
CHD
|
D:BCL101
|
3.5
|
23.9
|
1.0
|
|
CD2
|
D:HIS32
|
3.7
|
17.9
|
1.0
|
|
CBB
|
B:BCL101
|
3.8
|
26.1
|
1.0
|
|
CMB
|
B:BCL101
|
4.1
|
26.1
|
1.0
|
|
C3D
|
D:BCL101
|
4.2
|
23.9
|
1.0
|
|
C18
|
E:SPO101
|
4.2
|
29.5
|
1.0
|
|
C3A
|
D:BCL101
|
4.3
|
23.9
|
1.0
|
|
C2A
|
D:BCL101
|
4.3
|
23.9
|
1.0
|
|
C3C
|
D:BCL101
|
4.3
|
23.9
|
1.0
|
|
C2C
|
D:BCL101
|
4.3
|
23.9
|
1.0
|
|
ND1
|
D:HIS32
|
4.4
|
17.9
|
1.0
|
|
C2B
|
D:BCL101
|
4.4
|
23.9
|
1.0
|
|
C3B
|
D:BCL101
|
4.4
|
23.9
|
1.0
|
|
C2D
|
D:BCL101
|
4.4
|
23.9
|
1.0
|
|
CG
|
D:HIS32
|
4.7
|
17.9
|
1.0
|
|
C2B
|
B:BCL101
|
4.7
|
26.1
|
1.0
|
|
C20
|
E:SPO101
|
4.8
|
29.5
|
1.0
|
|
CBD
|
D:BCL101
|
4.9
|
23.9
|
1.0
|
|
CAB
|
B:BCL101
|
4.9
|
26.1
|
1.0
|
|
Magnesium binding site 8 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 8 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg102
b:19.6
occ:1.00
|
MG
|
E:BCL102
|
0.0
|
19.6
|
1.0
|
|
NC
|
E:BCL102
|
2.0
|
19.6
|
1.0
|
|
NA
|
E:BCL102
|
2.0
|
19.6
|
1.0
|
|
ND
|
E:BCL102
|
2.0
|
19.6
|
1.0
|
|
NB
|
E:BCL102
|
2.0
|
19.6
|
1.0
|
|
NE2
|
E:HIS38
|
2.3
|
17.7
|
1.0
|
|
C4D
|
E:BCL102
|
2.9
|
19.6
|
1.0
|
|
C4A
|
E:BCL102
|
3.0
|
19.6
|
1.0
|
|
C4C
|
E:BCL102
|
3.0
|
19.6
|
1.0
|
|
C1A
|
E:BCL102
|
3.0
|
19.6
|
1.0
|
|
C1C
|
E:BCL102
|
3.0
|
19.6
|
1.0
|
|
C1B
|
E:BCL102
|
3.1
|
19.6
|
1.0
|
|
C4B
|
E:BCL102
|
3.1
|
19.6
|
1.0
|
|
C1D
|
E:BCL102
|
3.1
|
19.6
|
1.0
|
|
CD2
|
E:HIS38
|
3.2
|
17.7
|
1.0
|
|
CE1
|
E:HIS38
|
3.3
|
17.7
|
1.0
|
|
CHB
|
E:BCL102
|
3.3
|
19.6
|
1.0
|
|
CHC
|
E:BCL102
|
3.4
|
19.6
|
1.0
|
|
CHA
|
E:BCL102
|
3.4
|
19.6
|
1.0
|
|
CHD
|
E:BCL102
|
3.5
|
19.6
|
1.0
|
|
CBB
|
F:BCL102
|
4.2
|
22.5
|
1.0
|
|
C3D
|
E:BCL102
|
4.2
|
19.6
|
1.0
|
|
CMB
|
F:BCL102
|
4.2
|
22.5
|
1.0
|
|
C2A
|
E:BCL102
|
4.3
|
19.6
|
1.0
|
|
C3A
|
E:BCL102
|
4.3
|
19.6
|
1.0
|
|
C3C
|
E:BCL102
|
4.3
|
19.6
|
1.0
|
|
C2C
|
E:BCL102
|
4.3
|
19.6
|
1.0
|
|
C3B
|
E:BCL102
|
4.4
|
19.6
|
1.0
|
|
ND1
|
E:HIS38
|
4.4
|
17.7
|
1.0
|
|
CG
|
E:HIS38
|
4.4
|
17.7
|
1.0
|
|
C2B
|
E:BCL102
|
4.4
|
19.6
|
1.0
|
|
C2D
|
E:BCL102
|
4.4
|
19.6
|
1.0
|
|
C2B
|
F:BCL102
|
4.8
|
22.5
|
1.0
|
|
CD1
|
D:ILE31
|
4.8
|
16.0
|
1.0
|
|
CMD
|
D:BCL101
|
4.9
|
23.9
|
1.0
|
|
CBD
|
E:BCL102
|
4.9
|
19.6
|
1.0
|
|
CAB
|
F:BCL102
|
5.0
|
22.5
|
1.0
|
|
Magnesium binding site 9 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 9 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg102
b:22.5
occ:1.00
|
MG
|
F:BCL102
|
0.0
|
22.5
|
1.0
|
|
NC
|
F:BCL102
|
2.0
|
22.5
|
1.0
|
|
NA
|
F:BCL102
|
2.0
|
22.5
|
1.0
|
|
ND
|
F:BCL102
|
2.0
|
22.5
|
1.0
|
|
NB
|
F:BCL102
|
2.0
|
22.5
|
1.0
|
|
NE2
|
F:HIS32
|
2.7
|
16.7
|
1.0
|
|
C4D
|
F:BCL102
|
2.9
|
22.5
|
1.0
|
|
C4A
|
F:BCL102
|
3.0
|
22.5
|
1.0
|
|
C4C
|
F:BCL102
|
3.0
|
22.5
|
1.0
|
|
C1A
|
F:BCL102
|
3.0
|
22.5
|
1.0
|
|
C1C
|
F:BCL102
|
3.0
|
22.5
|
1.0
|
|
C1B
|
F:BCL102
|
3.0
|
22.5
|
1.0
|
|
C4B
|
F:BCL102
|
3.1
|
22.5
|
1.0
|
|
C1D
|
F:BCL102
|
3.2
|
22.5
|
1.0
|
|
CHB
|
F:BCL102
|
3.4
|
22.5
|
1.0
|
|
CHC
|
F:BCL102
|
3.4
|
22.5
|
1.0
|
|
CE1
|
F:HIS32
|
3.4
|
16.7
|
1.0
|
|
CHA
|
F:BCL102
|
3.4
|
22.5
|
1.0
|
|
CHD
|
F:BCL102
|
3.5
|
22.5
|
1.0
|
|
CD2
|
F:HIS32
|
3.8
|
16.7
|
1.0
|
|
CBB
|
E:BCL102
|
3.9
|
19.6
|
1.0
|
|
C18
|
F:SPO104
|
4.0
|
27.4
|
1.0
|
|
CMB
|
E:BCL102
|
4.1
|
19.6
|
1.0
|
|
C3D
|
F:BCL102
|
4.2
|
22.5
|
1.0
|
|
C3A
|
F:BCL102
|
4.3
|
22.5
|
1.0
|
|
C2A
|
F:BCL102
|
4.3
|
22.5
|
1.0
|
|
C3C
|
F:BCL102
|
4.3
|
22.5
|
1.0
|
|
C2C
|
F:BCL102
|
4.3
|
22.5
|
1.0
|
|
C2B
|
F:BCL102
|
4.4
|
22.5
|
1.0
|
|
C3B
|
F:BCL102
|
4.4
|
22.5
|
1.0
|
|
C2D
|
F:BCL102
|
4.4
|
22.5
|
1.0
|
|
C20
|
F:SPO104
|
4.6
|
27.4
|
1.0
|
|
ND1
|
F:HIS32
|
4.6
|
16.7
|
1.0
|
|
C2B
|
E:BCL102
|
4.7
|
19.6
|
1.0
|
|
CG
|
F:HIS32
|
4.8
|
16.7
|
1.0
|
|
CBD
|
F:BCL102
|
4.9
|
22.5
|
1.0
|
|
CAB
|
E:BCL102
|
4.9
|
19.6
|
1.0
|
|
C17
|
F:SPO104
|
5.0
|
27.4
|
1.0
|
|
CMD
|
G:BCL101
|
5.0
|
21.2
|
1.0
|
|
Magnesium binding site 10 out
of 32 in 7f0l
Go back to
Magnesium Binding Sites List in 7f0l
Magnesium binding site 10 out
of 32 in the Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Photosynthetic LH1-Rc Super-Complex of Rhodobacter Sphaeroides Monomer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg101
b:21.2
occ:1.00
|
MG
|
G:BCL101
|
0.0
|
21.2
|
1.0
|
|
NC
|
G:BCL101
|
2.0
|
21.2
|
1.0
|
|
NA
|
G:BCL101
|
2.0
|
21.2
|
1.0
|
|
ND
|
G:BCL101
|
2.0
|
21.2
|
1.0
|
|
NB
|
G:BCL101
|
2.0
|
21.2
|
1.0
|
|
NE2
|
G:HIS38
|
2.2
|
18.4
|
1.0
|
|
C4D
|
G:BCL101
|
2.9
|
21.2
|
1.0
|
|
C1A
|
G:BCL101
|
3.0
|
21.2
|
1.0
|
|
C1C
|
G:BCL101
|
3.0
|
21.2
|
1.0
|
|
C4A
|
G:BCL101
|
3.0
|
21.2
|
1.0
|
|
C4C
|
G:BCL101
|
3.0
|
21.2
|
1.0
|
|
C4B
|
G:BCL101
|
3.0
|
21.2
|
1.0
|
|
C1B
|
G:BCL101
|
3.1
|
21.2
|
1.0
|
|
CD2
|
G:HIS38
|
3.1
|
18.4
|
1.0
|
|
C1D
|
G:BCL101
|
3.1
|
21.2
|
1.0
|
|
CE1
|
G:HIS38
|
3.2
|
18.4
|
1.0
|
|
CHC
|
G:BCL101
|
3.3
|
21.2
|
1.0
|
|
CHB
|
G:BCL101
|
3.4
|
21.2
|
1.0
|
|
CHA
|
G:BCL101
|
3.4
|
21.2
|
1.0
|
|
CHD
|
G:BCL101
|
3.5
|
21.2
|
1.0
|
|
CBB
|
I:BCL101
|
3.9
|
24.2
|
1.0
|
|
C3D
|
G:BCL101
|
4.2
|
21.2
|
1.0
|
|
ND1
|
G:HIS38
|
4.3
|
18.4
|
1.0
|
|
C2A
|
G:BCL101
|
4.3
|
21.2
|
1.0
|
|
CG
|
G:HIS38
|
4.3
|
18.4
|
1.0
|
|
C3C
|
G:BCL101
|
4.3
|
21.2
|
1.0
|
|
C3A
|
G:BCL101
|
4.3
|
21.2
|
1.0
|
|
C2C
|
G:BCL101
|
4.3
|
21.2
|
1.0
|
|
C3B
|
G:BCL101
|
4.4
|
21.2
|
1.0
|
|
C2B
|
G:BCL101
|
4.4
|
21.2
|
1.0
|
|
C2D
|
G:BCL101
|
4.4
|
21.2
|
1.0
|
|
CMB
|
I:BCL101
|
4.5
|
24.2
|
1.0
|
|
CMD
|
F:BCL102
|
4.7
|
22.5
|
1.0
|
|
C10
|
G:BCL101
|
4.8
|
21.2
|
1.0
|
|
C11
|
G:BCL101
|
4.9
|
21.2
|
1.0
|
|
CBD
|
G:BCL101
|
4.9
|
21.2
|
1.0
|
|
C2B
|
I:BCL101
|
4.9
|
24.2
|
1.0
|
|
Reference:
K.Tani,
V.P.Nagashima,
R.Kanno,
S.Kawamura,
R.Kikuchi,
M.Hall,
L.-J.Yu,
Y.Kimura,
M.T.Madigan,
A.Mizoguchi,
B.M.Humbel,
Z.-Y.Wang-Otomo.
A Previously Unrecognized Membrane Protein in the Rhodobacter Sphaeroides LH1-Rc Photocomplex. Nat Commun V. 12 2021.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-021-26561-9
Page generated: Wed Oct 2 21:07:27 2024
|
