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Magnesium in PDB 7f0n: Structure of Deamidated Ubiquitin

Protein crystallography data

The structure of Structure of Deamidated Ubiquitin, PDB code: 7f0n was solved by K.Chauhan, N.Varshney, R.Das, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.24 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.01, 39.06, 35.29, 90, 93.12, 90
R / Rfree (%) 13.6 / 18.2

Other elements in 7f0n:

The structure of Structure of Deamidated Ubiquitin also contains other interesting chemical elements:

Sodium (Na) 10 atoms
Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Deamidated Ubiquitin (pdb code 7f0n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Deamidated Ubiquitin, PDB code: 7f0n:

Magnesium binding site 1 out of 1 in 7f0n

Go back to Magnesium Binding Sites List in 7f0n
Magnesium binding site 1 out of 1 in the Structure of Deamidated Ubiquitin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Deamidated Ubiquitin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg112

b:37.5
occ:1.00
O A:GLY75 1.7 21.0 1.0
C A:GLY75 2.0 16.6 1.0
O A:HOH263 2.4 25.7 1.0
N A:GLY76 2.4 17.1 1.0
CA A:GLY76 2.7 20.2 1.0
O A:ARG74 2.7 14.2 1.0
CA A:GLY75 3.1 20.8 1.0
C A:ARG74 3.1 13.5 1.0
N A:GLY75 3.3 17.9 1.0
CB A:ARG74 3.5 15.2 1.0
CA A:ARG74 4.0 14.6 1.0
C A:GLY76 4.2 23.6 1.0
CG A:ARG74 4.9 17.1 1.0
OXT A:GLY76 4.9 27.1 1.0
N A:ARG74 4.9 11.0 1.0
CD A:ARG74 5.0 15.7 1.0
O A:GLY76 5.0 19.7 1.0

Reference:

R.Rashmi, P.Mohanty, R.Aravind, K.Chauhan, N.Varshney, R.Das. Structure of Deamidated Ubiquitin To Be Published.
Page generated: Wed Oct 2 21:07:22 2024

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