Atomistry » Magnesium » PDB 7ew6-7f6j » 7f4y
Atomistry »
  Magnesium »
    PDB 7ew6-7f6j »
      7f4y »

Magnesium in PDB 7f4y: Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes

Enzymatic activity of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes

All present enzymatic activity of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes, PDB code: 7f4y was solved by H.-S.Youn, J.Park, J.Y.An, Y.Lee, S.H.Eom, J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 2.20
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.44, 164.44, 165.601, 90, 90, 120
R / Rfree (%) 19.4 / 24.5

Other elements in 7f4y:

The structure of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes (pdb code 7f4y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes, PDB code: 7f4y:

Magnesium binding site 1 out of 1 in 7f4y

Go back to Magnesium Binding Sites List in 7f4y
Magnesium binding site 1 out of 1 in the Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1003

b:64.2
occ:1.00
OE2 B:GLU768 2.2 66.4 1.0
O B:HOH1407 2.7 55.3 1.0
O B:HOH1541 3.2 43.1 1.0
CD B:GLU768 3.4 77.9 1.0
CE2 B:PHE764 3.8 31.2 1.0
CB B:GLU768 3.9 46.4 1.0
CA B:LYS765 4.0 36.6 1.0
CG B:GLU768 4.0 53.7 1.0
O B:HOH1554 4.1 60.2 1.0
CD2 B:PHE764 4.1 28.9 1.0
OE1 B:GLU768 4.3 77.2 1.0
CG B:LYS765 4.3 57.8 1.0
OE2 B:GLU892 4.4 35.1 0.5
CB B:LYS765 4.5 43.8 1.0
O B:LYS765 4.6 34.1 1.0
N B:LYS765 4.8 31.3 1.0
O B:PHE764 4.9 29.3 1.0
C B:LYS765 4.9 35.0 1.0
CZ B:PHE764 4.9 31.6 1.0

Reference:

H.-S.Youn, J.Park, J.Y.An, Y.Lee, S.H.Eom, J.Wang. Crystal Structure of Replisomal Dimer of Dna Polymerase From Bacteriophage RB69 with Dna Duplexes To Be Published.
Page generated: Wed Oct 2 21:11:04 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy