Atomistry » Magnesium » PDB 7jho-7jpo » 7jk3
Atomistry »
  Magnesium »
    PDB 7jho-7jpo »
      7jk3 »

Magnesium in PDB 7jk3: Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6 (pdb code 7jk3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6, PDB code: 7jk3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7jk3

Go back to Magnesium Binding Sites List in 7jk3
Magnesium binding site 1 out of 4 in the Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg902

b:94.7
occ:1.00
OG1 D:THR63 2.1 93.0 1.0
O2B D:ATP901 2.1 0.6 1.0
O3G D:ATP901 2.5 0.6 1.0
PB D:ATP901 3.3 0.6 1.0
PG D:ATP901 3.4 0.6 1.0
CB D:THR63 3.5 93.0 1.0
O2G D:ATP901 3.5 0.6 1.0
O3B D:ATP901 3.7 0.6 1.0
O1B D:ATP901 4.0 0.6 1.0
NH2 E:ARG144 4.2 95.7 1.0
N D:THR63 4.3 93.0 1.0
CG2 D:THR63 4.3 93.0 1.0
OE1 D:GLU147 4.4 99.2 1.0
CA D:THR63 4.4 93.0 1.0
O2A D:ATP901 4.6 0.6 1.0
O3A D:ATP901 4.6 0.6 1.0
OE2 E:GLU147 4.7 96.2 1.0
OE1 D:GLU148 4.8 0.8 1.0
CD D:GLU147 4.8 99.2 1.0
O1G D:ATP901 4.8 0.6 1.0
CG1 D:VAL180 4.9 90.2 1.0
NZ D:LYS62 5.0 91.7 1.0
CB D:LYS62 5.0 91.7 1.0

Magnesium binding site 2 out of 4 in 7jk3

Go back to Magnesium Binding Sites List in 7jk3
Magnesium binding site 2 out of 4 in the Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg902

b:95.6
occ:1.00
OG1 E:THR48 2.1 94.4 1.0
O2B E:ATP901 2.2 0.6 1.0
OD2 E:ASP126 2.8 98.2 1.0
OD1 E:ASP126 3.1 98.2 1.0
O1G E:ATP901 3.3 0.6 1.0
CG E:ASP126 3.3 98.2 1.0
CB E:THR48 3.4 94.4 1.0
O3G E:ATP901 3.4 0.6 1.0
PB E:ATP901 3.6 0.6 1.0
PG E:ATP901 3.8 0.6 1.0
CG2 E:THR48 4.1 94.4 1.0
O3B E:ATP901 4.2 0.6 1.0
O1B E:ATP901 4.5 0.6 1.0
CA E:THR48 4.5 94.4 1.0
N E:THR48 4.6 94.4 1.0
O1A E:ATP901 4.6 0.6 1.0
O3A E:ATP901 4.7 0.6 1.0
CB E:ASP126 4.8 98.2 1.0
OD1 E:ASN127 4.9 98.8 1.0

Magnesium binding site 3 out of 4 in 7jk3

Go back to Magnesium Binding Sites List in 7jk3
Magnesium binding site 3 out of 4 in the Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:85.4
occ:1.00
O2B A:ATP1001 2.1 98.0 1.0
OG1 A:THR605 2.2 92.5 1.0
O3G A:ATP1001 2.6 98.0 1.0
CB A:THR605 3.3 92.5 1.0
PB A:ATP1001 3.4 98.0 1.0
O3B A:ATP1001 3.7 98.0 1.0
PG A:ATP1001 3.8 98.0 1.0
CG2 A:THR605 3.9 92.5 1.0
NH2 D:ARG197 3.9 96.8 1.0
O3A A:ATP1001 4.1 98.0 1.0
OD1 A:ASP684 4.5 0.0 1.0
O1G A:ATP1001 4.5 98.0 1.0
CA A:THR605 4.5 92.5 1.0
OE1 A:GLU685 4.6 0.3 1.0
O1B A:ATP1001 4.6 98.0 1.0
N A:THR605 4.6 92.5 1.0
O1A A:ATP1001 4.7 98.0 1.0
CG A:ASP684 4.8 0.0 1.0
OE2 A:GLU685 4.9 0.3 1.0
CB A:ASP684 4.9 0.0 1.0
O2G A:ATP1001 4.9 98.0 1.0

Magnesium binding site 4 out of 4 in 7jk3

Go back to Magnesium Binding Sites List in 7jk3
Magnesium binding site 4 out of 4 in the Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Drosophila Orc Bound to Gc-Rich Dna and CDC6 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg902

b:0.0
occ:1.00
OG1 G:THR304 2.1 0.1 1.0
O2B G:ATP901 2.2 0.7 1.0
O3G G:ATP901 2.4 0.7 1.0
CB G:THR304 3.2 0.1 1.0
PB G:ATP901 3.5 0.7 1.0
OD1 G:ASP376 3.7 0.9 1.0
OE1 G:GLU377 3.7 0.4 1.0
PG G:ATP901 3.7 0.7 1.0
NH2 A:ARG734 3.8 0.9 1.0
O3B G:ATP901 3.9 0.7 1.0
CG2 G:THR304 3.9 0.1 1.0
OD2 G:ASP376 3.9 0.9 1.0
CG G:ASP376 4.2 0.9 1.0
O1A G:ATP901 4.3 0.7 1.0
O1G G:ATP901 4.3 0.7 1.0
O1B G:ATP901 4.3 0.7 1.0
CA G:THR304 4.4 0.1 1.0
N G:THR304 4.5 0.1 1.0
O3A G:ATP901 4.6 0.7 1.0
CD G:GLU377 4.8 0.4 1.0
PA G:ATP901 4.8 0.7 1.0
O2G G:ATP901 4.9 0.7 1.0
CZ A:ARG734 5.0 0.9 1.0
OH A:TYR698 5.0 0.8 1.0

Reference:

J.M.Schmidt, F.Bleichert. Structural Mechanism For Replication Origin Binding and Remodeling By A Metazoan Origin Recognition Complex and Its Co-Loader CDC6. Nat Commun V. 11 4263 2020.
ISSN: ESSN 2041-1723
PubMed: 32848132
DOI: 10.1038/S41467-020-18067-7
Page generated: Wed Oct 2 21:54:38 2024

Last articles

Mg in 4DV3
Mg in 4DV2
Mg in 4DV0
Mg in 4DV1
Mg in 4DUZ
Mg in 4DUY
Mg in 4DR7
Mg in 4DR6
Mg in 4DR5
Mg in 4DUX
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy