Magnesium in PDB 7jqq: The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly

The binding sites of Magnesium atom in the The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly (pdb code 7jqq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly, PDB code: 7jqq:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:50.0 occ:1.00 CB A:SER31 1.9 46.5 1.0 OD2 A:ASP118 2.1 44.0 1.0 OG A:SER31 2.1 46.5 1.0 O3G A:AGS401 2.1 44.0 1.0 OD1 A:ASP118 2.1 44.0 1.0 O1B A:AGS401 2.2 44.0 1.0 CG A:ASP118 2.4 44.0 1.0 CA A:SER31 3.2 46.5 1.0 PB A:AGS401 3.6 44.0 1.0 PG A:AGS401 3.6 44.0 1.0 N A:SER31 3.7 46.5 1.0 CB A:ASP118 3.9 44.0 1.0 O3B A:AGS401 4.2 44.0 1.0 NZ A:LYS30 4.3 44.0 1.0 O2G A:AGS401 4.4 44.0 1.0 C A:SER31 4.4 46.5 1.0 O3A A:AGS401 4.4 44.0 1.0 CG A:LYS30 4.4 44.0 1.0 C A:LYS30 4.5 44.0 1.0 O1A A:AGS401 4.5 44.0 1.0 CE A:LYS30 4.7 44.0 1.0 O2B A:AGS401 4.7 44.0 1.0 O A:LYS30 4.8 44.0 1.0 O A:SER31 4.8 46.5 1.0 SD A:MET34 4.8 45.9 1.0 CA A:ASP118 4.9 44.0 1.0 S1G A:AGS401 4.9 44.0 1.0 PA A:AGS401 4.9 44.0 1.0

Magnesium binding site 2 out of 3 in the The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:42.0 occ:1.00 OG B:SER31 2.0 35.2 1.0 CG B:ASP118 2.1 33.4 1.0 O3G B:AGS401 2.1 36.9 1.0 OD2 B:ASP118 2.1 33.4 1.0 OD1 B:ASP118 2.2 33.4 1.0 O1B B:AGS401 2.3 36.9 1.0 CB B:ASP118 3.1 33.4 1.0 CB B:SER31 3.1 35.2 1.0 CA B:SER31 3.6 35.2 1.0 PG B:AGS401 3.6 36.9 1.0 PB B:AGS401 3.7 36.9 1.0 CD2 B:LEU156 3.8 29.8 1.0 N B:SER31 3.9 35.2 1.0 O3B B:AGS401 4.1 36.9 1.0 O2G B:AGS401 4.3 36.9 1.0 CA B:ASP118 4.4 33.4 1.0 N B:GLU119 4.5 28.9 1.0 O2B B:AGS401 4.6 36.9 1.0 CG B:LEU156 4.7 29.8 1.0 C B:ASP118 4.7 33.4 1.0 O2A B:AGS401 4.8 36.9 1.0 C B:LYS30 4.8 34.1 1.0 S1G B:AGS401 4.9 36.9 1.0 O3A B:AGS401 4.9 36.9 1.0

Magnesium binding site 3 out of 3 in the The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Bacteriophage Phi-29 Viral Genome Packaging Motor Assembly within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:40.0 occ:1.00 CB C:SER31 2.0 34.6 1.0 OD2 C:ASP118 2.1 34.7 1.0 OG C:SER31 2.1 34.6 1.0 OD1 C:ASP118 2.1 34.7 1.0 O3G C:AGS401 2.1 31.4 1.0 O1B C:AGS401 2.2 31.4 1.0 CG C:ASP118 2.3 34.7 1.0 CA C:SER31 3.1 34.6 1.0 PB C:AGS401 3.6 31.4 1.0 PG C:AGS401 3.6 31.4 1.0 N C:SER31 3.6 34.6 1.0 CD2 C:LEU156 3.6 34.6 1.0 CB C:ASP118 3.6 34.7 1.0 O2A C:AGS401 3.7 31.4 1.0 OG D:SER106 4.0 37.2 1.0 O3B C:AGS401 4.1 31.4 1.0 CG C:LEU156 4.3 34.6 1.0 O1A C:AGS401 4.3 31.4 1.0 PA C:AGS401 4.4 31.4 1.0 C C:SER31 4.4 34.6 1.0 O3A C:AGS401 4.5 31.4 1.0 O2G C:AGS401 4.6 31.4 1.0 O2B C:AGS401 4.7 31.4 1.0 OH C:TYR65 4.7 21.4 1.0 CA C:ASP118 4.7 34.7 1.0 S1G C:AGS401 4.7 31.4 1.0 C C:LYS30 4.8 34.9 1.0

M.Woodson, J.Pajak, B.P.Mahler, W.Zhao, W.Zhang, G.Arya, M.A.White, P.J.Jardine, M.C.Morais. A Viral Genome Packaging Motor Transitions Between Cyclic and Helical Symmetry to Translocate Dsdna. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 33962953
DOI: 10.1126/SCIADV.ABC1955