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Magnesium in PDB 7ky5: Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State

Enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State

All present enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State:
7.6.2.1;

Other elements in 7ky5:

The structure of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Fluorine (F) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State (pdb code 7ky5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State, PDB code: 7ky5:

Magnesium binding site 1 out of 1 in 7ky5

Go back to Magnesium Binding Sites List in 7ky5
Magnesium binding site 1 out of 1 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1704

b:178.6
occ:1.00
CG2 A:ILE1042 2.7 177.1 1.0
CD2 A:LEU1010 3.2 160.5 1.0
CG1 A:ILE1042 3.3 177.1 1.0
CD1 A:ILE1042 3.3 177.1 1.0
CD A:LYS713 3.3 147.6 1.0
CG2 A:THR718 3.3 164.9 1.0
CB A:THR718 3.4 164.9 1.0
CB A:ILE1042 3.6 177.1 1.0
CE A:LYS713 3.7 147.6 1.0
CB A:LEU717 3.8 163.1 1.0
OD2 A:ASP1008 3.9 178.8 1.0
NZ A:LYS713 4.1 147.6 1.0
N A:THR718 4.2 164.9 1.0
OG1 A:THR718 4.3 164.9 1.0
C A:LEU717 4.4 163.1 1.0
CA A:THR718 4.4 164.9 1.0
CG A:LEU1010 4.7 160.5 1.0
CG A:LYS713 4.7 147.6 1.0
CA A:ILE1042 4.7 177.1 1.0
CG A:LEU717 4.8 163.1 1.0
CA A:LEU717 4.8 163.1 1.0
O A:LEU717 4.8 163.1 1.0

Reference:

L.Bai, Q.You, B.K.Jain, H.D.Duan, A.Kovach, T.R.Graham, H.Li. Transport Mechanism of P4 Atpase Phosphatidylcholine Flippases. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33320091
DOI: 10.7554/ELIFE.62163
Page generated: Wed Oct 2 22:59:49 2024

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