Magnesium in PDB 7m5y: Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride

The structure of Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride also contains other interesting chemical elements:

Fluorine

(F)

4 atoms

The binding sites of Magnesium atom in the Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride (pdb code 7m5y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride, PDB code: 7m5y:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1201 b:62.6 occ:1.00 F4 A:MF41202 2.1 74.4 1.0 OD2 A:ASP513 2.2 71.1 1.0 O A:THR515 2.4 74.4 1.0 OD1 A:ASP878 2.5 72.8 1.0 CG A:ASP513 3.3 71.1 1.0 HB A:THR515 3.4 74.4 1.0 H A:GLY879 3.5 74.1 1.0 CG A:ASP878 3.5 72.8 1.0 C A:THR515 3.5 74.4 1.0 HA3 A:GLY879 3.6 74.1 1.0 OD1 A:ASP513 3.8 71.1 1.0 OD2 A:ASP878 3.8 72.8 1.0 MG A:MF41202 3.9 74.4 1.0 N A:GLY879 4.0 74.1 1.0 HA3 A:GLY516 4.1 73.5 1.0 HA3 A:GLY347 4.2 72.2 1.0 O A:GLY347 4.2 72.2 1.0 CB A:THR515 4.2 74.4 1.0 H A:THR515 4.2 74.4 1.0 H A:ASP878 4.2 72.8 1.0 CA A:GLY879 4.2 74.1 1.0 HG22 A:THR515 4.3 74.4 1.0 CA A:THR515 4.3 74.4 1.0 HB3 A:ASP513 4.4 71.1 1.0 N A:THR515 4.4 74.4 1.0 CB A:ASP513 4.4 71.1 1.0 HA2 A:GLY347 4.5 72.2 1.0 F1 A:MF41202 4.5 74.4 1.0 N A:GLY516 4.5 73.5 1.0 H A:THR517 4.6 71.3 1.0 HA2 A:GLY879 4.6 74.1 1.0 OD1 A:ASN881 4.6 72.9 1.0 HD22 A:ASN881 4.6 72.9 1.0 CA A:GLY347 4.7 72.2 1.0 CA A:GLY516 4.7 73.5 1.0 CG2 A:THR515 4.8 74.4 1.0 OD2 A:ASP882 4.8 74.1 1.0 F2 A:MF41202 4.8 74.4 1.0 HB2 A:ASP513 4.8 71.1 1.0 F3 A:MF41202 4.9 74.4 1.0 CB A:ASP878 4.9 72.8 1.0 C A:ASP878 4.9 72.8 1.0 C A:GLY347 4.9 72.2 1.0 N A:ASP878 5.0 72.8 1.0

Magnesium binding site 2 out of 2 in the Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human ATP13A2 in the Outward-Facing E2 State Bound to Spermine and Magnesium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:74.4 occ:1.00 MG A:MF41202 0.0 74.4 1.0 F3 A:MF41202 1.8 74.4 1.0 F4 A:MF41202 1.8 74.4 1.0 F1 A:MF41202 1.8 74.4 1.0 F2 A:MF41202 1.8 74.4 1.0 H A:THR515 2.8 74.4 1.0 OD1 A:ASP513 2.9 71.1 1.0 HB A:THR515 3.0 74.4 1.0 H A:GLY751 3.1 68.5 1.0 HA3 A:GLY347 3.3 72.2 1.0 OD2 A:ASP513 3.5 71.1 1.0 H A:LYS514 3.5 71.4 1.0 CG A:ASP513 3.6 71.1 1.0 N A:THR515 3.6 74.4 1.0 OG1 A:THR515 3.7 74.4 1.0 CB A:THR515 3.7 74.4 1.0 OG1 A:THR750 3.7 69.9 1.0 HG1 A:THR515 3.8 74.4 1.0 O A:THR346 3.8 71.2 1.0 HA A:THR750 3.8 69.9 1.0 OE2 A:GLU348 3.8 75.0 1.0 HD22 A:ASN881 3.8 72.9 1.0 MG A:MG1201 3.9 62.6 1.0 HB3 A:LYS514 3.9 71.4 1.0 N A:GLY751 3.9 68.5 1.0 CA A:GLY347 4.1 72.2 1.0 HG1 A:THR750 4.2 69.9 1.0 CA A:THR515 4.2 74.4 1.0 N A:LYS514 4.2 71.4 1.0 HZ1 A:LYS859 4.3 71.2 1.0 H A:ASP752 4.3 70.7 1.0 O A:GLY347 4.3 72.2 1.0 C A:GLY347 4.3 72.2 1.0 HB2 A:ASP752 4.4 70.7 1.0 CD A:GLU348 4.4 75.0 1.0 O A:THR515 4.4 74.4 1.0 CA A:THR750 4.5 69.9 1.0 HA3 A:GLY751 4.6 68.5 1.0 ND2 A:ASN881 4.6 72.9 1.0 CB A:THR750 4.6 69.9 1.0 C A:LYS514 4.7 71.4 1.0 CB A:LYS514 4.7 71.4 1.0 HA2 A:GLY347 4.7 72.2 1.0 N A:ASP752 4.7 70.7 1.0 CA A:GLY751 4.7 68.5 1.0 CA A:LYS514 4.7 71.4 1.0 C A:THR346 4.8 71.2 1.0 C A:THR750 4.8 69.9 1.0 HB A:THR750 4.8 69.9 1.0 HG3 A:GLU348 4.8 75.0 1.0 OE1 A:GLU348 4.8 75.0 1.0 C A:THR515 4.9 74.4 1.0 HD21 A:ASN881 4.9 72.9 1.0 N A:GLY347 5.0 72.2 1.0 HE3 A:LYS514 5.0 71.4 1.0 HB2 A:LYS514 5.0 71.4 1.0 CB A:ASP513 5.0 71.1 1.0

J.Tillinghast, S.Drury, D.Bowser, A.Benn, K.P.K.Lee. Structural Mechanisms For Gating and Ion Selectivity of the Human Polyamine Transporter ATP13A2. Mol.Cell V. 81 4650 2021.
ISSN: ISSN 1097-2765
PubMed: 34715014
DOI: 10.1016/J.MOLCEL.2021.10.002