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Magnesium in PDB 7m99: Atpgs Bound Tnsc Filament From Shcast System

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atpgs Bound Tnsc Filament From Shcast System (pdb code 7m99). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Atpgs Bound Tnsc Filament From Shcast System, PDB code: 7m99:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 7m99

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Magnesium binding site 1 out of 7 in the Atpgs Bound Tnsc Filament From Shcast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atpgs Bound Tnsc Filament From Shcast System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:30.0
occ:1.00
 O1B B:AGS300 2.2 41.0 1.0
OG1 B:THR67 2.5 41.0 1.0
S1G B:AGS300 2.5 41.0 1.0
PB B:AGS300 3.5 41.0 1.0
CB B:THR67 3.5 41.0 1.0
PG B:AGS300 3.7 41.0 1.0
O3A B:AGS300 3.7 41.0 1.0
O2G B:AGS300 3.8 41.0 1.0
O3B B:AGS300 4.1 41.0 1.0
OE2 A:GLU162 4.1 41.0 1.0
NH2 A:ARG189 4.2 41.0 1.0
CG2 B:THR67 4.3 41.0 1.0
OE2 B:GLU145 4.5 41.0 1.0
OE1 A:GLU162 4.6 41.0 1.0
CA B:THR67 4.7 41.0 1.0
OD1 B:ASP144 4.8 41.0 1.0
O2B B:AGS300 4.8 41.0 1.0
CD A:GLU162 4.8 41.0 1.0
N B:THR67 4.8 41.0 1.0
CD B:GLU145 4.8 41.0 1.0
NE2 A:GLN185 4.9 41.0 1.0
OD2 B:ASP144 4.9 41.0 1.0
CG B:GLU145 5.0 41.0 1.0

Magnesium binding site 2 out of 7 in 7m99

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Magnesium binding site 2 out of 7 in the Atpgs Bound Tnsc Filament From Shcast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atpgs Bound Tnsc Filament From Shcast System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:30.0
occ:1.00
 O3G C:AGS300 2.2 41.0 1.0
OG1 C:THR67 2.4 41.0 1.0
O3B C:AGS300 2.6 41.0 1.0
O1B C:AGS300 2.7 41.0 1.0
PG C:AGS300 2.9 41.0 1.0
PB C:AGS300 3.0 41.0 1.0
CB C:THR67 3.6 41.0 1.0
O2B C:AGS300 3.7 41.0 1.0
O2G C:AGS300 3.8 41.0 1.0
OE2 C:GLU145 4.0 41.0 1.0
OD2 C:ASP144 4.4 41.0 1.0
N C:THR67 4.4 41.0 1.0
NH2 B:ARG189 4.4 41.0 1.0
O3A C:AGS300 4.5 41.0 1.0
CA C:THR67 4.6 41.0 1.0
OD1 C:ASP144 4.6 41.0 1.0
S1G C:AGS300 4.6 41.0 1.0
NZ C:LYS66 4.6 41.0 1.0
CG2 C:THR67 4.6 41.0 1.0
NE2 B:GLN185 4.6 41.0 1.0
CG C:GLU145 4.8 41.0 1.0
CD C:GLU145 4.8 41.0 1.0
CG C:ASP144 5.0 41.0 1.0

Magnesium binding site 3 out of 7 in 7m99

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Magnesium binding site 3 out of 7 in the Atpgs Bound Tnsc Filament From Shcast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atpgs Bound Tnsc Filament From Shcast System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg301

b:30.0
occ:1.00
 O3B D:AGS300 2.2 41.0 1.0
OG1 D:THR67 2.3 41.0 1.0
O3G D:AGS300 2.7 41.0 1.0
PG D:AGS300 2.9 41.0 1.0
OE2 D:GLU145 3.4 41.0 1.0
CB D:THR67 3.4 41.0 1.0
PB D:AGS300 3.4 41.0 1.0
O3A D:AGS300 3.5 41.0 1.0
S1G D:AGS300 3.8 41.0 1.0
O1B D:AGS300 4.0 41.0 1.0
N D:THR67 4.3 41.0 1.0
CD D:GLU145 4.3 41.0 1.0
O2G D:AGS300 4.4 41.0 1.0
CA D:THR67 4.4 41.0 1.0
CG2 D:THR67 4.4 41.0 1.0
CG D:GLU145 4.6 41.0 1.0
O2B D:AGS300 4.6 41.0 1.0
NZ D:LYS66 4.7 41.0 1.0
NE2 C:GLN185 4.8 41.0 1.0
PA D:AGS300 4.8 41.0 1.0
NH2 C:ARG189 4.9 41.0 1.0
O2A D:AGS300 4.9 41.0 1.0
OE2 C:GLU162 5.0 41.0 1.0
OD2 D:ASP144 5.0 41.0 1.0

Magnesium binding site 4 out of 7 in 7m99

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Magnesium binding site 4 out of 7 in the Atpgs Bound Tnsc Filament From Shcast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atpgs Bound Tnsc Filament From Shcast System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg301

b:30.0
occ:1.00
 OG1 E:THR67 2.2 41.0 1.0
O3B E:AGS300 2.2 41.0 1.0
PG E:AGS300 3.2 41.0 1.0
CB E:THR67 3.3 41.0 1.0
O3A E:AGS300 3.4 41.0 1.0
PB E:AGS300 3.4 41.0 1.0
O3G E:AGS300 3.4 41.0 1.0
S1G E:AGS300 3.9 41.0 1.0
O1B E:AGS300 4.0 41.0 1.0
N E:THR67 4.2 41.0 1.0
CA E:THR67 4.3 41.0 1.0
CG2 E:THR67 4.3 41.0 1.0
OD2 E:ASP144 4.4 41.0 1.0
O2B E:AGS300 4.6 41.0 1.0
O2G E:AGS300 4.7 41.0 1.0
OD1 E:ASP144 4.7 41.0 1.0
NZ E:LYS66 4.8 41.0 1.0
NH2 D:ARG189 4.9 41.0 1.0
OE2 D:GLU162 4.9 41.0 1.0
CG E:ASP144 4.9 41.0 1.0
PA E:AGS300 4.9 41.0 1.0
NE2 D:GLN185 4.9 41.0 1.0
CD E:GLU145 5.0 41.0 1.0

Magnesium binding site 5 out of 7 in 7m99

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Magnesium binding site 5 out of 7 in the Atpgs Bound Tnsc Filament From Shcast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atpgs Bound Tnsc Filament From Shcast System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg301

b:30.0
occ:1.00
 O2B F:AGS300 2.2 41.0 1.0
OG1 F:THR67 2.2 41.0 1.0
S1G F:AGS300 2.5 41.0 1.0
PG F:AGS300 3.4 41.0 1.0
PB F:AGS300 3.4 41.0 1.0
O3B F:AGS300 3.5 41.0 1.0
CB F:THR67 3.5 41.0 1.0
O2A F:AGS300 3.6 41.0 1.0
O3G F:AGS300 3.6 41.0 1.0
OD2 F:ASP144 4.2 41.0 1.0
CG2 F:THR67 4.3 41.0 1.0
OE2 E:GLU162 4.4 41.0 1.0
O1B F:AGS300 4.5 41.0 1.0
O3A F:AGS300 4.5 41.0 1.0
OE2 F:GLU145 4.6 41.0 1.0
CA F:THR67 4.6 41.0 1.0
PA F:AGS300 4.6 41.0 1.0
NH2 E:ARG189 4.7 41.0 1.0
N F:THR67 4.7 41.0 1.0
O2G F:AGS300 4.9 41.0 1.0
OD1 F:ASP144 5.0 41.0 1.0

Magnesium binding site 6 out of 7 in 7m99

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Magnesium binding site 6 out of 7 in the Atpgs Bound Tnsc Filament From Shcast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atpgs Bound Tnsc Filament From Shcast System within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg301

b:30.0
occ:1.00
 OG1 G:THR67 1.9 41.0 1.0
S1G G:AGS300 2.1 41.0 1.0
CB G:THR67 2.7 41.0 1.0
O2B G:AGS300 2.8 41.0 1.0
CG2 G:THR67 3.3 41.0 1.0
OE2 F:GLU162 3.6 41.0 1.0
OD2 G:ASP144 3.8 41.0 1.0
CA G:THR67 4.0 41.0 1.0
PG G:AGS300 4.1 41.0 1.0
PB G:AGS300 4.2 41.0 1.0
CD F:GLU162 4.4 41.0 1.0
N G:THR67 4.4 41.0 1.0
OE1 F:GLU162 4.5 41.0 1.0
OE2 G:GLU145 4.6 41.0 1.0
NH2 F:ARG189 4.7 41.0 1.0
O3B G:AGS300 4.7 41.0 1.0
O2A G:AGS300 4.8 41.0 1.0
CG G:ASP144 4.8 41.0 1.0
O3G G:AGS300 4.9 41.0 1.0
O2G G:AGS300 4.9 41.0 1.0
O3A G:AGS300 5.0 41.0 1.0

Magnesium binding site 7 out of 7 in 7m99

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Magnesium binding site 7 out of 7 in the Atpgs Bound Tnsc Filament From Shcast System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atpgs Bound Tnsc Filament From Shcast System within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg301

b:30.0
occ:1.00
 OG1 H:THR67 1.8 41.0 1.0
S1G H:AGS300 2.5 41.0 1.0
O3B H:AGS300 2.7 41.0 1.0
CB H:THR67 2.9 41.0 1.0
PG H:AGS300 3.2 41.0 1.0
CG2 H:THR67 3.8 41.0 1.0
O3G H:AGS300 4.1 41.0 1.0
CA H:THR67 4.1 41.0 1.0
OD2 H:ASP144 4.1 41.0 1.0
OE1 H:GLU145 4.2 41.0 1.0
PB H:AGS300 4.2 41.0 1.0
N H:THR67 4.2 41.0 1.0
OE2 G:GLU162 4.3 41.0 1.0
O3A H:AGS300 4.4 41.0 1.0
O1A H:AGS300 4.5 41.0 1.0
O2G H:AGS300 4.5 41.0 1.0
OD1 H:ASP144 4.5 41.0 1.0
O2A H:AGS300 4.6 41.0 1.0
NH2 G:ARG189 4.7 41.0 1.0
CG H:ASP144 4.7 41.0 1.0
PA H:AGS300 4.7 41.0 1.0
O1B H:AGS300 4.7 41.0 1.0
CD H:GLU145 4.9 41.0 1.0
OE1 G:GLU162 4.9 41.0 1.0
CD G:GLU162 5.0 41.0 1.0

Reference:

J.Park, A.Tsai, E.Mehrotra, M.T.Petassi, S.C.Hsieh, A.Ke, J.E.Peters, E.H.Kellogg. Structural Basis For Target-Site Selection in Rna-Guided Dna Transposition Systems Science 2021.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABI8976
Page generated: Thu Aug 14 10:12:21 2025

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