Atomistry » Magnesium » PDB 7n0c-7ndi » 7nau
Atomistry »
  Magnesium »
    PDB 7n0c-7ndi »
      7nau »

Magnesium in PDB 7nau: Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)

Other elements in 7nau:

The structure of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 57;

Binding sites:

The binding sites of Magnesium atom in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) (pdb code 7nau). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 57 binding sites of Magnesium where determined in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement), PDB code: 7nau:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 1 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1601

b:116.6
occ:1.00
OP1 A:G803 4.1 156.4 1.0
OP2 A:U804 4.2 150.7 1.0
O4 A:U772 4.4 156.5 1.0
O6 A:G773 4.5 161.4 1.0
C5' A:G803 4.6 156.4 1.0
O5' A:G803 4.8 156.4 1.0
OP1 A:U804 4.8 150.7 1.0
P A:U804 4.9 150.7 1.0

Magnesium binding site 2 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 2 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1602

b:120.8
occ:1.00
OP2 A:A415 3.8 148.0 1.0
O6 A:G425 4.0 162.8 1.0
O6 A:G417 4.2 157.1 1.0
OP2 A:G416 4.2 154.0 1.0
N7 A:G416 4.2 154.0 1.0
N4 A:C418 4.3 161.2 1.0
O4 A:U426 4.4 157.3 1.0
N7 A:G417 4.4 157.1 1.0
O6 A:G416 4.7 154.0 1.0
P A:A415 4.8 148.0 1.0
C5 A:G416 4.9 154.0 1.0
OP1 A:A415 4.9 148.0 1.0
C6 A:G417 5.0 157.1 1.0
C8 A:G416 5.0 154.0 1.0

Magnesium binding site 3 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 3 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1603

b:138.4
occ:1.00
OP2 A:A560 1.8 140.6 1.0
OP1 A:U562 2.5 147.9 1.0
P A:A560 3.0 140.6 1.0
O3' A:A559 3.2 136.6 1.0
N2 A:G566 3.7 139.5 1.0
P A:U562 3.7 147.9 1.0
C5' A:A560 3.7 140.6 1.0
O5' A:A560 3.7 140.6 1.0
O5' A:U562 4.1 147.9 1.0
OP1 A:A560 4.3 140.6 1.0
OP2 A:U562 4.3 147.9 1.0
OP1 A:A563 4.5 140.1 1.0
O2' A:A559 4.5 136.6 1.0
O2' A:U561 4.6 147.8 1.0
N1 A:G566 4.6 139.5 1.0
C3' A:A559 4.6 136.6 1.0
OP2 A:G558 4.6 134.8 1.0
C2 A:G566 4.6 139.5 1.0
OP1 A:G557 4.9 136.9 1.0
O3' A:U561 5.0 147.8 1.0

Magnesium binding site 4 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 4 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1604

b:118.1
occ:1.00
OP2 A:C352 1.9 136.0 1.0
P A:C352 3.1 136.0 1.0
O5' A:C352 3.6 136.0 1.0
OP1 A:C352 3.7 136.0 1.0
O4' A:C352 4.1 136.0 1.0
N7 A:G354 4.1 126.0 1.0
O2 A:C330 4.2 130.7 1.0
O3' A:G351 4.4 145.8 1.0
C8 A:G354 4.4 126.0 1.0
C4' A:C352 4.4 136.0 1.0
O4' A:G331 4.5 123.4 1.0
N6 A:A59 4.5 122.4 1.0
N1 A:A59 4.5 122.4 1.0
C5' A:C352 4.6 136.0 1.0
C3' A:G351 4.7 145.8 1.0

Magnesium binding site 5 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 5 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1605

b:92.7
occ:1.00
OP2 A:C355 3.9 128.5 1.0
N7 A:G357 4.0 132.8 1.0
N7 A:A356 4.1 130.9 1.0
O6 A:G357 4.1 132.8 1.0
C8 A:A356 4.5 130.9 1.0
OP2 A:A356 4.6 130.9 1.0
O2' A:C352 4.7 136.0 1.0
C5 A:C355 4.7 128.5 1.0
C5 A:G357 4.8 132.8 1.0
C6 A:G357 4.8 132.8 1.0
C8 A:G357 5.0 132.8 1.0

Magnesium binding site 6 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 6 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1606

b:120.6
occ:1.00
O6 A:G646 4.1 138.6 1.0
N4 A:C647 4.2 138.6 1.0
N7 A:G646 4.3 138.6 1.0
N7 A:G645 4.4 136.7 1.0
O4 A:U593 4.4 138.7 1.0
O6 A:G592 4.6 140.4 1.0
O6 A:G645 4.7 136.7 1.0
C6 A:G646 4.9 138.6 1.0
C5 A:G645 4.9 136.7 1.0
C5 A:G646 5.0 138.6 1.0

Magnesium binding site 7 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 7 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1607

b:112.4
occ:1.00
O3' A:G1526 3.9 146.6 1.0
OP1 A:U1527 4.0 149.5 1.0
OP2 A:G731 4.1 140.4 1.0
OP2 A:A816 4.2 137.3 1.0
O2' A:G1526 4.6 146.6 1.0
P A:U1527 4.6 149.5 1.0
C5' A:U1527 4.7 149.5 1.0
OP1 A:G730 4.8 138.7 1.0
P A:G731 4.9 140.4 1.0
C3' A:G1526 4.9 146.6 1.0
C4' A:G1526 4.9 146.6 1.0
OP1 A:G731 5.0 140.4 1.0

Magnesium binding site 8 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 8 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1608

b:137.9
occ:1.00
OP2 A:A768 1.9 139.0 1.0
P A:A768 2.9 139.0 1.0
OP1 A:A768 3.2 139.0 1.0
OP2 A:C805 3.5 156.0 1.0
O5' A:A768 3.5 139.0 1.0
C5' A:U804 3.6 150.7 1.0
OP1 A:U804 3.6 150.7 1.0
O3' A:A767 4.3 136.8 1.0
O5' A:U804 4.3 150.7 1.0
P A:C805 4.6 156.0 1.0
P A:U804 4.6 150.7 1.0
C4' A:U804 4.6 150.7 1.0
OP2 A:G769 4.7 145.7 1.0
C5' A:A768 4.8 139.0 1.0
C3' A:A767 4.8 136.8 1.0
O3' A:U804 5.0 150.7 1.0

Magnesium binding site 9 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 9 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1609

b:117.2
occ:1.00
N7 A:G324 2.0 128.1 1.0
C8 A:G324 2.7 128.1 1.0
C5 A:G324 3.1 128.1 1.0
C6 A:G324 3.8 128.1 1.0
O6 A:G324 3.9 128.1 1.0
N9 A:G324 3.9 128.1 1.0
OP2 A:G324 3.9 128.1 1.0
OP2 A:G326 4.0 129.9 1.0
C4 A:G324 4.1 128.1 1.0
OP1 A:G326 4.5 129.9 1.0
O5' A:G324 4.6 128.1 1.0
OP2 A:U323 4.7 129.3 1.0
P A:G326 4.8 129.9 1.0
P A:G324 4.9 128.1 1.0

Magnesium binding site 10 out of 57 in 7nau

Go back to Magnesium Binding Sites List in 7nau
Magnesium binding site 10 out of 57 in the Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Bacterial 30S Ribosomal Subunit Assembly Complex State C (Consensus Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1610

b:116.5
occ:1.00
N7 A:G617 3.6 131.7 1.0
OP1 A:A621 4.2 135.8 1.0
C8 A:G617 4.3 131.7 1.0
OP2 A:G617 4.3 131.7 1.0
OP1 A:C620 4.3 137.8 1.0
OP2 A:A621 4.3 135.8 1.0
C5 A:G617 4.6 131.7 1.0
P A:A621 4.7 135.8 1.0
O6 A:G617 4.8 131.7 1.0

Reference:

A.Schedlbauer, I.Iturrioz, B.Ochoa-Lizarralde, T.Diercks, J.P.Lopez-Alonso, J.L.Lavin, T.Kaminishi, R.Capuni, N.Dhimole, E.De Astigarraga, D.Gil-Carton, P.Fucini, S.R.Connell. A Conserved Rrna Switch Is Central to Decoding Site Maturation on the Small Ribosomal Subunit. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34088665
DOI: 10.1126/SCIADV.ABF7547
Page generated: Thu Oct 3 01:18:13 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy