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Magnesium in PDB 7ngf: P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix

Enzymatic activity of P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix

All present enzymatic activity of P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix:
3.4.21.53;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix (pdb code 7ngf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix, PDB code: 7ngf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7ngf

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Magnesium binding site 1 out of 5 in the P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:247.9
occ:1.00
 OG1 A:THR530 2.1 227.4 1.0
O1B A:ATP1001 2.1 248.4 1.0
O2G A:ATP1001 2.1 248.4 1.0
O1G A:ATP1001 2.6 248.4 1.0
HB A:THR530 2.7 227.4 1.0
PG A:ATP1001 2.8 248.4 1.0
CB A:THR530 2.9 227.4 1.0
PB A:ATP1001 3.2 248.4 1.0
O3B A:ATP1001 3.4 248.4 1.0
HG21 A:THR530 3.6 227.4 1.0
HH22 B:ARG652 3.6 259.2 1.0
H A:THR530 3.6 227.4 1.0
O1A A:ATP1001 3.7 248.4 1.0
HZ3 A:LYS529 3.8 238.9 1.0
CG2 A:THR530 3.8 227.4 1.0
HZ1 A:LYS529 4.0 238.9 1.0
N A:THR530 4.0 227.4 1.0
CA A:THR530 4.1 227.4 1.0
O3G A:ATP1001 4.2 248.4 1.0
HB2 A:LYS529 4.2 238.9 1.0
NH2 B:ARG652 4.2 259.2 1.0
PA A:ATP1001 4.2 248.4 1.0
O3A A:ATP1001 4.3 248.4 1.0
O2A A:ATP1001 4.3 248.4 1.0
O2B A:ATP1001 4.3 248.4 1.0
NZ A:LYS529 4.3 238.9 1.0
HH21 B:ARG652 4.3 259.2 1.0
HG23 A:THR530 4.5 227.4 1.0
HG22 A:THR530 4.5 227.4 1.0
HA A:THR530 4.5 227.4 1.0
HE2 A:LYS529 4.5 238.9 1.0
HH22 A:ARG710 4.7 232.2 1.0
H A:GLY526 4.8 236.0 1.0
HH12 A:ARG710 4.8 232.2 1.0
OD2 A:ASP590 4.9 277.7 1.0

Magnesium binding site 2 out of 5 in 7ngf

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Magnesium binding site 2 out of 5 in the P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:267.0
occ:1.00
 O1G B:ATP1001 2.0 242.7 1.0
OG1 B:THR530 2.0 227.9 1.0
O1B B:ATP1001 2.1 242.7 1.0
O2G B:ATP1001 2.1 242.7 1.0
PG B:ATP1001 2.4 242.7 1.0
HB B:THR530 2.4 227.9 1.0
CB B:THR530 2.7 227.9 1.0
PB B:ATP1001 3.2 242.7 1.0
O3B B:ATP1001 3.2 242.7 1.0
HG21 B:THR530 3.4 227.9 1.0
H B:THR530 3.4 227.9 1.0
O1A B:ATP1001 3.6 242.7 1.0
CG2 B:THR530 3.6 227.9 1.0
HH22 C:ARG652 3.6 262.6 1.0
HZ3 B:LYS529 3.7 228.3 1.0
O3G B:ATP1001 3.8 242.7 1.0
N B:THR530 3.9 227.9 1.0
CA B:THR530 3.9 227.9 1.0
OE2 B:GLU591 3.9 269.4 1.0
O2B B:ATP1001 4.1 242.7 1.0
PA B:ATP1001 4.2 242.7 1.0
HB2 B:LYS529 4.2 228.3 1.0
O2A B:ATP1001 4.2 242.7 1.0
HG23 B:THR530 4.2 227.9 1.0
HZ1 B:LYS529 4.3 228.3 1.0
HG22 B:THR530 4.3 227.9 1.0
O3A B:ATP1001 4.3 242.7 1.0
NH2 C:ARG652 4.3 262.6 1.0
HH21 C:ARG652 4.4 262.6 1.0
NZ B:LYS529 4.4 228.3 1.0
HE21 C:GLN615 4.4 238.0 1.0
HA B:THR530 4.4 227.9 1.0
HH21 B:ARG710 4.4 234.7 1.0
H B:GLY526 4.8 237.8 1.0
HE22 C:GLN615 4.8 238.0 1.0
HE2 B:LYS529 4.8 228.3 1.0
OD2 B:ASP590 4.8 264.7 1.0
NE2 C:GLN615 4.9 238.0 1.0
C B:LYS529 4.9 228.3 1.0
HZ2 B:LYS529 4.9 228.3 1.0
C B:THR530 5.0 227.9 1.0
H B:LYS529 5.0 228.3 1.0

Magnesium binding site 3 out of 5 in 7ngf

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Magnesium binding site 3 out of 5 in the P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1002

b:260.2
occ:1.00
 O2G D:ATP1001 2.0 266.0 1.0
O1B D:ATP1001 2.1 266.0 1.0
HG1 D:THR530 2.2 255.7 1.0
OG1 D:THR530 2.2 255.7 1.0
HB D:THR530 2.4 255.7 1.0
O3G D:ATP1001 2.4 266.0 1.0
PG D:ATP1001 2.5 266.0 1.0
CB D:THR530 2.8 255.7 1.0
O3B D:ATP1001 3.1 266.0 1.0
H D:THR530 3.2 255.7 1.0
PB D:ATP1001 3.3 266.0 1.0
O1A D:ATP1001 3.4 266.0 1.0
HG21 D:THR530 3.7 255.7 1.0
N D:THR530 3.7 255.7 1.0
CA D:THR530 3.8 255.7 1.0
O1G D:ATP1001 3.8 266.0 1.0
CG2 D:THR530 3.9 255.7 1.0
HB2 D:LYS529 4.1 274.4 1.0
PA D:ATP1001 4.2 266.0 1.0
HA D:THR530 4.3 255.7 1.0
O3A D:ATP1001 4.3 266.0 1.0
O2B D:ATP1001 4.4 266.0 1.0
HG22 D:THR530 4.4 255.7 1.0
HG23 D:THR530 4.5 255.7 1.0
HH12 D:ARG546 4.5 300.5 1.0
HZ3 D:LYS529 4.6 274.4 1.0
O2A D:ATP1001 4.8 266.0 1.0
C D:LYS529 4.8 274.4 1.0
CB D:LYS529 4.9 274.4 1.0
HB3 D:LYS529 5.0 274.4 1.0

Magnesium binding site 4 out of 5 in 7ngf

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Magnesium binding site 4 out of 5 in the P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1002

b:273.2
occ:1.00
 HG1 E:THR530 1.5 258.6 1.0
O1A E:ATP1001 2.0 263.2 1.0
OG1 E:THR530 2.1 258.6 1.0
O1B E:ATP1001 2.1 263.2 1.0
O2G E:ATP1001 2.1 263.2 1.0
PA E:ATP1001 2.8 263.2 1.0
O2A E:ATP1001 3.0 263.2 1.0
PG E:ATP1001 3.1 263.2 1.0
PB E:ATP1001 3.1 263.2 1.0
O1G E:ATP1001 3.3 263.2 1.0
CB E:THR530 3.3 258.6 1.0
HB E:THR530 3.3 258.6 1.0
O3A E:ATP1001 3.3 263.2 1.0
H E:THR530 3.5 258.6 1.0
O3B E:ATP1001 3.5 263.2 1.0
HG21 E:THR530 3.8 258.6 1.0
CG2 E:THR530 4.1 258.6 1.0
N E:THR530 4.2 258.6 1.0
O5' E:ATP1001 4.2 263.2 1.0
CA E:THR530 4.4 258.6 1.0
HG23 E:THR530 4.4 258.6 1.0
O3G E:ATP1001 4.5 263.2 1.0
O2B E:ATP1001 4.5 263.2 1.0
HB2 E:LYS529 4.6 263.7 1.0
HH22 E:ARG546 4.6 309.4 1.0
HH12 E:ARG546 4.6 309.4 1.0
NH2 E:ARG546 4.7 309.4 1.0
CZ E:ARG546 4.7 309.4 1.0
NH1 E:ARG546 4.7 309.4 1.0
HA E:THR530 4.8 258.6 1.0
H E:LYS529 4.8 263.7 1.0
OD2 E:ASP590 4.8 328.2 1.0
HG22 E:THR530 4.9 258.6 1.0
HH21 E:ARG546 5.0 309.4 1.0
HA2 E:GLY526 5.0 249.9 1.0
H5'2 E:ATP1001 5.0 263.2 1.0

Magnesium binding site 5 out of 5 in 7ngf

Go back to Magnesium Binding Sites List in 7ngf
Magnesium binding site 5 out of 5 in the P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1002

b:284.4
occ:1.00
 OG1 F:THR530 2.1 264.0 1.0
O1B F:ATP1001 2.1 280.7 1.0
O2G F:ATP1001 2.1 280.7 1.0
HB F:THR530 2.7 264.0 1.0
O1G F:ATP1001 2.8 280.7 1.0
PG F:ATP1001 2.9 280.7 1.0
CB F:THR530 2.9 264.0 1.0
PB F:ATP1001 3.2 280.7 1.0
O3B F:ATP1001 3.4 280.7 1.0
HG21 F:THR530 3.5 264.0 1.0
CG2 F:THR530 3.8 264.0 1.0
HH12 A:ARG652 3.8 288.6 1.0
H F:THR530 3.8 264.0 1.0
OD2 F:ASP590 4.0 298.8 1.0
OE1 F:GLU591 4.0 313.2 1.0
HH22 A:ARG652 4.1 288.6 1.0
CA F:THR530 4.1 264.0 1.0
HB2 F:LYS529 4.1 278.0 1.0
N F:THR530 4.1 264.0 1.0
O2B F:ATP1001 4.2 280.7 1.0
HZ3 F:LYS529 4.2 278.0 1.0
O3G F:ATP1001 4.3 280.7 1.0
O3A F:ATP1001 4.3 280.7 1.0
OD1 F:ASP590 4.4 298.8 1.0
O2A F:ATP1001 4.4 280.7 1.0
HG22 F:THR530 4.4 264.0 1.0
O1A F:ATP1001 4.4 280.7 1.0
HG23 F:THR530 4.4 264.0 1.0
HA F:THR530 4.5 264.0 1.0
HZ1 F:LYS529 4.5 278.0 1.0
HH12 F:ARG710 4.5 277.9 1.0
HG1 F:THR638 4.5 300.1 1.0
PA F:ATP1001 4.5 280.7 1.0
NH1 A:ARG652 4.6 288.6 1.0
CG F:ASP590 4.6 298.8 1.0
HE2 F:LYS529 4.6 278.0 1.0
NZ F:LYS529 4.8 278.0 1.0
HH11 F:ARG710 4.8 277.9 1.0
NH2 A:ARG652 4.8 288.6 1.0
HG2 F:GLU591 4.9 313.2 1.0
H F:GLY526 4.9 270.3 1.0
HH22 F:ARG546 4.9 278.8 1.0
HG21 F:THR638 4.9 300.1 1.0

Reference:

I.Mohammed, K.A.Schmitz, N.Schenck, T.Maier, J.P.Abrahams. P2C-State of Wild Type Human Mitochondrial LONP1 Protease with Bound Endogenous Substrate Protein and in Presence of Atp/Adp Mix To Be Published.
Page generated: Thu Aug 14 11:07:33 2025

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