Atomistry » Magnesium » PDB 7ocr-7oim » 7oeb
Atomistry »
  Magnesium »
    PDB 7ocr-7oim »
      7oeb »

Magnesium in PDB 7oeb: Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]

Enzymatic activity of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]

All present enzymatic activity of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]:
2.7.7.48;

Other elements in 7oeb:

The structure of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] (pdb code 7oeb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo], PDB code: 7oeb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7oeb

Go back to Magnesium Binding Sites List in 7oeb
Magnesium binding site 1 out of 2 in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg2302

b:19.4
occ:1.00
OD1 L:ASP1332 2.2 20.8 1.0
OD1 L:ASP1190 2.7 24.0 1.0
OE1 L:GLU1382 2.8 16.7 1.0
CG L:ASP1332 3.2 20.8 1.0
O L:MET1189 3.3 20.9 1.0
OD2 L:ASP1332 3.6 20.8 1.0
CD L:GLU1382 3.6 16.7 1.0
CG L:ASP1190 3.7 24.0 1.0
OE2 L:GLU1382 3.7 16.7 1.0
C L:MET1189 3.8 20.9 1.0
N L:MET1189 4.1 20.9 1.0
O L:GLN1333 4.1 17.9 1.0
OD2 L:ASP1190 4.2 24.0 1.0
N L:ASP1190 4.3 24.0 1.0
O L:GLU1382 4.3 16.7 1.0
N L:GLN1333 4.3 17.9 1.0
CB L:ASP1332 4.4 20.8 1.0
C L:SER1188 4.5 18.7 1.0
CA L:ASP1332 4.5 20.8 1.0
CA L:MET1189 4.6 20.9 1.0
CA L:ASP1190 4.6 24.0 1.0
CB L:SER1188 4.6 18.7 1.0
CB L:ASP1190 4.8 24.0 1.0
C L:GLU1382 4.8 16.7 1.0
CA L:SER1188 4.8 18.7 1.0
CA L:PHE1383 4.8 17.3 1.0
C L:ASP1332 5.0 20.8 1.0
C L:GLN1333 5.0 17.9 1.0
CG L:GLU1382 5.0 16.7 1.0

Magnesium binding site 2 out of 2 in 7oeb

Go back to Magnesium Binding Sites List in 7oeb
Magnesium binding site 2 out of 2 in the Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lassa Virus L Protein Bound to 3' Promoter Rna (Well-Resolved Endonuclease) [3END-Endo] within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg2303

b:57.9
occ:1.00
OE2 L:GLU51 2.7 73.5 1.0
CG L:ASP89 2.9 77.6 1.0
CD L:GLU51 2.9 73.5 1.0
CB L:ASP89 3.1 77.6 1.0
OD2 L:ASP89 3.1 77.6 1.0
OD1 L:ASP89 3.2 77.6 1.0
OE1 L:GLU51 3.3 73.5 1.0
CG L:GLU51 3.7 73.5 1.0
CA L:ASP89 3.8 77.6 1.0
N L:ASP89 4.6 77.6 1.0
CB L:GLU51 4.8 73.5 1.0
OD1 L:ASP66 4.9 88.0 1.0
OE2 L:GLU102 4.9 74.1 1.0
O L:ASN1095 4.9 66.0 1.0
OD1 L:ASN1095 4.9 66.0 1.0
C L:ASP89 4.9 77.6 1.0

Reference:

T.Kouba, D.Vogel, S.Thorkelsson, E.Quemin, H.William, M.Milewski, C.Busch, S.Gunther, K.Grunewald, M.Rosenthal, S.Cusack. Conformational Changes in Lassa Virus L Protein Associated with Promoter Binding and Rna Synthesis Activity To Be Published.
Page generated: Thu Oct 3 02:57:15 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy