Magnesium in PDB 7p06: Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp

The structure of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp also contains other interesting chemical elements:

Vanadium

(V)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp (pdb code 7p06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp, PDB code: 7p06:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1702 b:55.4 occ:1.00 O1G A:AOV1703 1.9 59.0 1.0 O1B A:AOV1703 1.9 59.0 1.0 HE22 A:GLN951 2.0 60.1 1.0 OE1 A:GLN951 2.0 60.1 1.0 OG1 A:THR912 2.3 54.4 1.0 NE2 A:GLN951 2.5 60.1 1.0 CD A:GLN951 2.5 60.1 1.0 HG1 A:THR912 2.9 54.4 1.0 VG A:AOV1703 3.1 59.0 1.0 HB A:THR912 3.1 54.4 1.0 PB A:AOV1703 3.2 59.0 1.0 HE21 A:GLN951 3.2 60.1 1.0 CB A:THR912 3.3 54.4 1.0 H2G1 A:AOV1703 3.6 59.0 1.0 O4G A:AOV1703 3.6 59.0 1.0 O3B A:AOV1703 3.7 59.0 1.0 O2G A:AOV1703 3.7 59.0 1.0 HB2 A:SER310 3.7 59.9 1.0 H4G1 A:AOV1703 3.8 59.0 1.0 O3A A:AOV1703 3.8 59.0 1.0 HG21 A:THR912 3.8 54.4 1.0 H A:THR912 3.9 54.4 1.0 H A:GLY311 3.9 59.0 1.0 CG A:GLN951 3.9 60.1 1.0 H2A A:AOV1703 4.0 59.0 1.0 CG2 A:THR912 4.1 54.4 1.0 HG2 A:GLN951 4.2 60.1 1.0 HB3 A:GLN951 4.2 60.1 1.0 O2B A:AOV1703 4.4 59.0 1.0 OD1 A:ASP1035 4.5 57.6 1.0 CA A:THR912 4.5 54.4 1.0 N A:THR912 4.5 54.4 1.0 OD2 A:ASP1035 4.5 57.6 1.0 HG3 A:GLN951 4.5 60.1 1.0 CB A:GLN951 4.5 60.1 1.0 HB2 A:GLN951 4.6 60.1 1.0 O2A A:AOV1703 4.6 59.0 1.0 HG2 A:GLU1036 4.6 58.6 1.0 CB A:SER310 4.6 59.9 1.0 N A:GLY311 4.7 59.0 1.0 HB2 A:LYS911 4.8 54.2 1.0 HG22 A:THR912 4.8 54.4 1.0 HG23 A:THR912 4.8 54.4 1.0 PA A:AOV1703 4.8 59.0 1.0 O3G A:AOV1703 4.8 59.0 1.0 HB3 A:SER310 4.8 59.9 1.0 HA A:THR912 4.8 54.4 1.0 CG A:ASP1035 4.8 57.6 1.0 H A:GLY312 4.9 56.1 1.0 OE2 A:GLU1036 4.9 58.6 1.0 HG3 A:GLU1036 4.9 58.6 1.0 HH22 A:ARG307 5.0 60.9 1.0 HA A:SER310 5.0 59.9 1.0

A.Harris, M.Wagner, D.Du, S.Raschka, L.M.Nentwig, H.Gohlke, S.H.J.Smits, B.F.Luisi, L.Schmitt. Structure and Efflux Mechanism of the Yeast Pleiotropic Drug Resistance Transporter PDR5. Nat Commun V. 12 5254 2021.
ISSN: ESSN 2041-1723
PubMed: 34489436
DOI: 10.1038/S41467-021-25574-8