Magnesium in PDB 7pm6: Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) (pdb code 7pm6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER), PDB code: 7pm6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:71.5 occ:1.00 O1B A:ADP1902 1.9 78.4 1.0 OG1 A:THR170 2.6 74.2 1.0 OG A:SER218 2.8 63.1 1.0 PB A:ADP1902 3.2 78.4 1.0 O3B A:ADP1902 3.6 78.4 1.0 CB A:THR170 3.9 74.2 1.0 CB A:SER218 4.0 63.1 1.0 O3A A:ADP1902 4.0 78.4 1.0 O2B A:ADP1902 4.4 78.4 1.0 OD2 A:ASP437 4.4 66.0 1.0 ND2 A:ASN208 4.5 65.4 1.0 O A:ASN216 4.5 66.9 1.0 OE2 A:GLU204 4.6 73.1 1.0 CG2 A:THR170 4.7 74.2 1.0 N A:SER218 4.7 63.1 1.0 N A:THR170 4.8 74.2 1.0 PA A:ADP1902 4.8 78.4 1.0 O1A A:ADP1902 4.9 78.4 1.0 ND2 A:ASN216 4.9 66.9 1.0 CA A:THR170 4.9 74.2 1.0 NZ A:LYS169 4.9 70.9 1.0 CA A:SER218 4.9 63.1 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:53.5 occ:1.00 O2B C:ADP401 2.3 54.8 1.0 PB C:ADP401 3.5 54.8 1.0 O2A C:ADP401 3.6 54.8 1.0 O3B C:ADP401 3.7 54.8 1.0 OD1 C:ASP154 4.0 52.2 1.0 CA C:GLY156 4.0 50.6 1.0 O3A C:ADP401 4.1 54.8 1.0 OD2 C:ASP154 4.3 52.2 1.0 PA C:ADP401 4.4 54.8 1.0 CA C:GLY301 4.5 50.2 1.0 OE1 C:GLN137 4.5 54.7 1.0 NE2 C:GLN137 4.5 54.7 1.0 N C:GLY156 4.6 50.6 1.0 CG C:ASP154 4.6 52.2 1.0 CD C:GLN137 4.6 54.7 1.0 O1B C:ADP401 4.7 54.8 1.0 O C:SER155 4.7 50.6 1.0 CG2 C:VAL339 4.8 47.0 1.0 C C:SER155 4.8 50.6 1.0 OD2 C:ASP11 4.9 57.5 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1901 b:75.5 occ:1.00 O1B D:ADP1902 2.0 84.0 1.0 OG1 D:THR170 2.3 79.5 1.0 OG D:SER218 2.9 68.2 1.0 PB D:ADP1902 3.4 84.0 1.0 CB D:THR170 3.6 79.5 1.0 O3B D:ADP1902 3.8 84.0 1.0 CB D:SER218 4.1 68.2 1.0 O3A D:ADP1902 4.2 84.0 1.0 ND2 D:ASN208 4.2 70.6 1.0 CG2 D:THR170 4.2 79.5 1.0 OD2 D:ASP437 4.2 71.7 1.0 O2B D:ADP1902 4.5 84.0 1.0 OE2 D:GLU204 4.5 80.6 1.0 CA D:THR170 4.7 79.5 1.0 N D:THR170 4.7 79.5 1.0 O D:ASN216 4.7 73.0 1.0 CD D:GLU204 4.9 80.6 1.0 ND2 D:ASN216 4.9 73.0 1.0 O2A D:ADP1902 4.9 84.0 1.0 N D:SER218 5.0 68.2 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:52.3 occ:1.00 O2B F:ADP401 2.0 54.1 1.0 PB F:ADP401 3.4 54.1 1.0 O2A F:ADP401 3.5 54.1 1.0 O3B F:ADP401 3.8 54.1 1.0 OD1 F:ASP154 4.1 50.4 1.0 O3A F:ADP401 4.1 54.1 1.0 CA F:GLY156 4.1 49.3 1.0 CA F:GLY301 4.3 49.1 1.0 PA F:ADP401 4.3 54.1 1.0 OD2 F:ASP154 4.4 50.4 1.0 O1B F:ADP401 4.5 54.1 1.0 CG2 F:VAL339 4.6 45.8 1.0 CG F:ASP154 4.6 50.4 1.0 OE1 F:GLN137 4.7 53.2 1.0 NE2 F:GLN137 4.7 53.2 1.0 N F:GLY156 4.7 49.3 1.0 CD F:GLN137 4.7 53.2 1.0 NZ F:LYS18 4.7 49.9 1.0 O F:SER155 4.8 49.6 1.0 OD2 F:ASP11 4.9 57.2 1.0 C F:SER155 4.9 49.6 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:53.7 occ:1.00 O2B G:ADP401 2.0 52.6 1.0 PB G:ADP401 3.3 52.6 1.0 O2A G:ADP401 3.6 52.6 1.0 O3B G:ADP401 3.7 52.6 1.0 O3A G:ADP401 4.0 52.6 1.0 CA G:GLY156 4.2 49.9 1.0 OD1 G:ASP154 4.3 52.9 1.0 NE2 G:GLN137 4.3 55.8 1.0 OD2 G:ASP11 4.3 58.5 1.0 PA G:ADP401 4.4 52.6 1.0 O1B G:ADP401 4.5 52.6 1.0 NZ G:LYS18 4.5 50.4 1.0 CD G:GLN137 4.5 55.8 1.0 OE1 G:GLN137 4.6 55.8 1.0 OD2 G:ASP154 4.6 52.9 1.0 CA G:GLY301 4.8 48.6 1.0 CG2 G:VAL339 4.8 47.6 1.0 CA G:GLY13 4.9 56.8 1.0 N G:GLY156 4.9 49.9 1.0 CG G:ASP154 4.9 52.9 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724