Magnesium in PDB 7pmc: Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 7)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 7) (pdb code 7pmc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 7), PDB code: 7pmc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 7)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 7) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:59.7 occ:1.00 OG1 A:THR170 2.0 59.7 1.0 O1B A:ADP1902 3.1 59.2 1.0 OG A:SER218 3.2 54.3 1.0 CB A:THR170 3.4 59.7 1.0 OD2 A:ASP437 3.7 52.0 1.0 CG2 A:THR170 3.9 59.7 1.0 O1A A:ADP1902 4.0 59.2 1.0 O3B A:ADP1902 4.1 59.2 1.0 PB A:ADP1902 4.1 59.2 1.0 N A:THR170 4.2 59.7 1.0 CA A:THR170 4.3 59.7 1.0 ND2 A:ASN208 4.4 55.3 1.0 CB A:SER218 4.5 54.3 1.0 CG A:ASP437 4.6 52.0 1.0 OD1 A:ASP437 4.7 52.0 1.0 O3A A:ADP1902 4.8 59.2 1.0 OE2 A:GLU204 4.9 60.2 1.0 NZ A:LYS169 5.0 59.0 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 7)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 7) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:55.1 occ:1.00 O2B C:ADP401 2.0 66.4 1.0 PB C:ADP401 3.2 66.4 1.0 O3B C:ADP401 3.5 66.4 1.0 OE1 C:GLN137 3.6 52.4 1.0 O2A C:ADP401 3.8 66.4 1.0 O3A C:ADP401 4.0 66.4 1.0 OD2 C:ASP11 4.2 58.9 1.0 CA C:GLY156 4.2 58.2 1.0 CD C:GLN137 4.3 52.4 1.0 OD2 C:ASP154 4.3 57.8 1.0 O1B C:ADP401 4.3 66.4 1.0 PA C:ADP401 4.6 66.4 1.0 OD1 C:ASP154 4.6 57.8 1.0 CA C:GLY301 4.7 60.6 1.0 CG2 C:VAL339 4.7 48.2 1.0 NZ C:LYS18 4.7 53.7 1.0 CB C:VAL339 4.9 48.2 1.0 NE2 C:GLN137 4.9 52.4 1.0 N C:GLY156 4.9 58.2 1.0 CG C:ASP154 4.9 57.8 1.0 CG1 C:VAL339 5.0 48.2 1.0 CA C:GLY13 5.0 59.8 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724