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Magnesium in PDB 7qpr: Structure of Full Length Spot

Enzymatic activity of Structure of Full Length Spot

All present enzymatic activity of Structure of Full Length Spot:
2.7.6.5;

Protein crystallography data

The structure of Structure of Full Length Spot, PDB code: 7qpr was solved by A.Garcia-Pino, H.Tamman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.88 / 2.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 128.791, 133.761, 211.328, 90, 90, 90
R / Rfree (%) 22.1 / 25.8

Other elements in 7qpr:

The structure of Structure of Full Length Spot also contains other interesting chemical elements:

Zinc (Zn) 4 atoms
Chlorine (Cl) 3 atoms
Manganese (Mn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Full Length Spot (pdb code 7qpr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Full Length Spot, PDB code: 7qpr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7qpr

Go back to Magnesium Binding Sites List in 7qpr
Magnesium binding site 1 out of 2 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg807

b:109.1
occ:1.00
O1B C:G4P803 2.1 192.0 1.0
PB C:G4P803 3.4 192.1 1.0
O C:HOH1085 3.7 68.9 1.0
O2B C:G4P803 3.8 192.1 1.0
O3B C:G4P803 4.3 192.1 1.0
O3A C:G4P803 4.4 192.1 1.0
O2A C:G4P803 4.5 192.0 1.0

Magnesium binding site 2 out of 2 in 7qpr

Go back to Magnesium Binding Sites List in 7qpr
Magnesium binding site 2 out of 2 in the Structure of Full Length Spot


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Full Length Spot within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg804

b:74.1
occ:1.00
O2A D:G4P803 2.4 130.0 0.8
O3B D:G4P803 2.4 130.4 0.8
O D:HOH960 2.8 63.6 1.0
CB D:SER113 2.8 66.4 1.0
NZ D:LYS158 2.9 115.5 1.0
O D:SER112 3.5 67.7 1.0
PA D:G4P803 3.6 129.8 0.8
C5' D:G4P803 3.6 128.4 0.8
C D:SER112 3.6 67.0 1.0
N D:SER113 3.7 65.8 1.0
O D:GLN111 3.8 67.0 1.0
PB D:G4P803 3.8 130.3 0.8
OG D:SER113 3.8 69.1 1.0
CA D:SER113 3.9 65.1 1.0
O5' D:G4P803 4.0 129.1 0.8
O D:HOH905 4.0 70.5 1.0
O3A D:G4P803 4.0 130.1 0.8
CE D:LYS158 4.2 113.7 1.0
O1C D:G4P803 4.3 127.8 0.8
CA D:SER112 4.3 67.2 1.0
O1B D:G4P803 4.6 130.1 0.8
C D:GLN111 4.8 66.7 1.0
CD D:LYS158 4.8 110.4 1.0
O2B D:G4P803 4.8 130.3 0.8
O1A D:G4P803 4.9 129.7 0.8
C4' D:G4P803 5.0 127.7 0.8

Reference:

A.Garcia-Pino, H.Tamman. Structure of Full Length Spot To Be Published.
Page generated: Thu Oct 3 05:55:36 2024

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