Magnesium in PDB 7rb9: Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex (pdb code 7rb9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex, PDB code: 7rb9:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:74.0 occ:1.00 OE1 B:GLN137 2.2 69.7 1.0 O2B B:ADP401 2.3 77.5 1.0 OD2 B:ASP154 2.4 65.7 1.0 CD B:GLN137 3.1 69.7 1.0 CG B:ASP154 3.4 65.7 1.0 NE2 B:GLN137 3.6 69.7 1.0 PB B:ADP401 3.7 77.5 1.0 OD1 B:ASP154 3.8 65.7 1.0 CG B:GLN137 4.2 69.7 1.0 CB B:GLN137 4.2 69.7 1.0 CG2 B:VAL339 4.2 67.1 1.0 O3B B:ADP401 4.3 77.5 1.0 O3A B:ADP401 4.5 77.5 1.0 N B:GLY156 4.6 65.9 1.0 CA B:GLY156 4.6 65.9 1.0 CB B:ASP154 4.7 65.7 1.0 O1B B:ADP401 4.8 77.5 1.0 CE1 B:HIS161 4.8 56.9 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:74.0 occ:1.00 O2B A:ADP401 2.2 77.5 1.0 OD2 A:ASP154 2.3 65.7 1.0 OE1 A:GLN137 2.4 69.7 1.0 CD A:GLN137 3.3 69.7 1.0 CG A:ASP154 3.4 65.7 1.0 PB A:ADP401 3.7 77.5 1.0 OD1 A:ASP154 3.7 65.7 1.0 NE2 A:GLN137 3.8 69.7 1.0 O3B A:ADP401 4.3 77.5 1.0 CG2 A:VAL339 4.3 67.1 1.0 CB A:GLN137 4.4 69.7 1.0 O3A A:ADP401 4.4 77.5 1.0 CG A:GLN137 4.4 69.7 1.0 N A:GLY156 4.4 65.9 1.0 CA A:GLY156 4.4 65.9 1.0 CB A:ASP154 4.7 65.7 1.0 O1B A:ADP401 4.7 77.5 1.0 CE1 A:HIS161 4.8 56.9 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:74.0 occ:1.00 O2B C:ADP401 2.4 77.5 1.0 OE1 C:GLN137 2.5 69.7 1.0 OD2 C:ASP154 2.5 65.7 1.0 OD1 C:ASP154 2.9 65.7 1.0 CG C:ASP154 3.0 65.7 1.0 CD C:GLN137 3.5 69.7 1.0 PB C:ADP401 3.9 77.5 1.0 NE2 C:GLN137 4.1 69.7 1.0 N C:GLY156 4.2 65.9 1.0 CA C:GLY156 4.3 65.9 1.0 CB C:ASP154 4.4 65.7 1.0 CB C:GLN137 4.4 69.7 1.0 CG2 C:VAL339 4.5 67.1 1.0 O3A C:ADP401 4.5 77.5 1.0 CG C:GLN137 4.5 69.7 1.0 CE1 C:HIS161 4.5 56.9 1.0 O3B C:ADP401 4.6 77.5 1.0 O1B C:ADP401 4.9 77.5 1.0 C C:SER155 4.9 63.2 1.0 N C:SER155 5.0 63.2 1.0

R.Gong, F.Jiang, Z.G.Moreland, M.J.Reynolds, P.S.Gurel, A.Shams, M.R.Bowl, J.E.Bird, G.M.Alushin. Structural Basis For Tunable Control of Actin Dynamics By Myosin-15 in Mechanosensory Stereocilia Biorxiv 2021.
DOI: 10.1101/2021.07.09.451843