Magnesium in PDB 7rby: Crystal Structure of Nanobody NB112 and Sars-Cov-2 Rbd

The structure of Crystal Structure of Nanobody NB112 and Sars-Cov-2 Rbd, PDB code: 7rby was solved by Y.Chen, W.Tolbert, M.Pazgier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.93 / 2.82
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.702, 59.004, 216.879, 90, 91.34, 90
R / Rfree (%)	20.1 / 28.7

The binding sites of Magnesium atom in the Crystal Structure of Nanobody NB112 and Sars-Cov-2 Rbd (pdb code 7rby). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Nanobody NB112 and Sars-Cov-2 Rbd, PDB code: 7rby:

Magnesium binding site 1 out of 1 in the Crystal Structure of Nanobody NB112 and Sars-Cov-2 Rbd


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nanobody NB112 and Sars-Cov-2 Rbd within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:14.8 occ:1.00 O C:PRO499 3.4 16.8 1.0 C C:PRO499 4.4 10.5 1.0 CA C:THR500 4.6 11.9 1.0 N C:THR500 4.9 12.0 1.0 NE2 C:GLN506 5.0 15.0 1.0

T.J.Esparza, Y.Chen, N.P.Martin, H.Bielefeldt-Ohmann, R.A.Bowen, W.D.Tolbert, M.Pazgier, D.L.Brody. Nebulized Delivery of A Broadly Neutralizing Sars-Cov-2 Rbd-Specific Nanobody Prevents Clinical, Virological, and Pathological Disease in A Syrian Hamster Model of Covid-19. Mabs V. 14 47144.
ISSN: ESSN 1942-0870
PubMed: 35289719
DOI: 10.1080/19420862.2022.2047144