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Magnesium in PDB 7rdu: Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph

Enzymatic activity of Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph

All present enzymatic activity of Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph:
1.1.1.86;

Protein crystallography data

The structure of Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph, PDB code: 7rdu was solved by L.W.Guddat, L.You, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.00 / 2.50
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 130.108, 130.108, 130.108, 90, 90, 90
R / Rfree (%) 19.5 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph (pdb code 7rdu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph, PDB code: 7rdu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7rdu

Go back to Magnesium Binding Sites List in 7rdu
Magnesium binding site 1 out of 2 in the Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:50.6
occ:1.00
OD1 A:ASP192 2.1 54.2 1.0
O A:HOH505 2.3 51.8 1.0
CG A:ASP192 3.1 51.0 1.0
OD2 A:ASP192 3.8 52.2 1.0
O A:ASP192 3.9 45.6 1.0
CA A:ASP192 3.9 48.3 1.0
CB A:ASP192 3.9 50.3 1.0
CG A:GLU196 4.0 51.2 1.0
OE2 A:GLU196 4.0 53.0 1.0
C A:ASP192 4.3 46.6 1.0
CD A:GLU196 4.4 49.4 1.0
CD1 A:LEU200 4.5 44.2 1.0

Magnesium binding site 2 out of 2 in 7rdu

Go back to Magnesium Binding Sites List in 7rdu
Magnesium binding site 2 out of 2 in the Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Campylobacter Jejuni Keto Said Reductoisomerase in Complex with Magnesium and Oxidixized and Reduced Nadph within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:67.2
occ:1.00
OE2 A:GLU196 2.9 53.0 1.0
OD2 A:ASP192 3.9 52.2 1.0
CD A:GLU196 4.0 49.4 1.0
OE1 A:GLU196 4.3 46.9 1.0
CG A:ASP192 4.8 51.0 1.0
NE2 A:HIS109 4.9 56.9 1.0
OD1 A:ASP192 4.9 54.2 1.0
O2D A:NDP404 5.0 66.8 0.6

Reference:

Y.Lv, L.Guddat. Multi-Faceted Approach For the Engineering of Enzyme Variants with Improved Properties For Industrial Applications To Be Published.
Page generated: Thu Aug 14 14:59:40 2025

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