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Magnesium in PDB 7rj1: Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp

Enzymatic activity of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp

All present enzymatic activity of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp:
5.4.99.5;

Protein crystallography data

The structure of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp, PDB code: 7rj1 was solved by P.J.Stogios, E.Evdokimova, K.Tan, R.Di Leo, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.85 / 2.16
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.751, 93.154, 99.709, 90, 106.96, 90
R / Rfree (%) 18.4 / 24.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp (pdb code 7rj1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp, PDB code: 7rj1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7rj1

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Magnesium binding site 1 out of 5 in the Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:59.0
occ:1.00
 O B:HOH474 2.1 60.9 1.0
O A:HOH410 2.2 48.5 1.0
O A:HOH428 2.3 48.2 1.0
OE2 A:GLU147 2.6 72.2 1.0
OD2 A:ASP29 2.7 45.8 1.0
O B:HOH486 3.1 56.0 1.0
OD1 A:ASP29 3.3 44.3 1.0
CG A:ASP29 3.4 43.0 1.0
OE2 B:GLU32 3.6 65.7 1.0
CD A:GLU147 3.7 73.0 1.0
OE2 B:GLU147 4.1 82.3 1.0
O A:HOH482 4.2 55.2 1.0
CG2 A:THR25 4.2 36.6 1.0
CG B:GLU32 4.3 45.5 1.0
CD B:GLU32 4.3 49.2 1.0
OE1 B:GLU147 4.4 83.8 1.0
OE1 A:GLU147 4.4 71.2 1.0
CG A:GLU147 4.5 58.4 1.0
CD B:GLU147 4.7 71.9 1.0
O A:THR25 4.8 35.0 1.0
CB A:ASP29 4.9 33.5 1.0
O B:HOH415 4.9 67.0 1.0
CB A:GLU147 4.9 38.6 1.0

Magnesium binding site 2 out of 5 in 7rj1

Go back to Magnesium Binding Sites List in 7rj1
Magnesium binding site 2 out of 5 in the Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:70.2
occ:1.00
 NE2 A:GLN134 2.2 68.0 1.0
O A:HOH481 2.5 59.2 1.0
O A:HOH431 2.5 50.6 1.0
CD A:GLN134 3.2 66.0 1.0
OE1 A:GLN134 3.5 78.8 1.0
OD2 B:ASP2 3.5 60.7 1.0
OD1 B:ASP2 3.7 57.8 1.0
CG B:ASP2 4.0 66.5 1.0
CG B:MET4 4.2 61.5 1.0
OE1 A:GLU136 4.3 59.8 1.0
O A:HOH502 4.4 44.0 1.0
OE2 A:GLU136 4.5 61.9 1.0
CB B:MET4 4.5 60.4 1.0
CG A:GLN134 4.5 57.8 1.0
CD A:GLU136 4.9 56.3 1.0
CB A:GLN134 4.9 56.5 1.0

Magnesium binding site 3 out of 5 in 7rj1

Go back to Magnesium Binding Sites List in 7rj1
Magnesium binding site 3 out of 5 in the Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:65.0
occ:1.00
 O A:HOH424 2.2 49.5 1.0
OD1 B:ASP29 2.2 55.7 1.0
O A:HOH496 2.3 45.7 1.0
O B:HOH409 2.4 50.1 1.0
CG B:ASP29 3.0 48.4 1.0
OD2 B:ASP29 3.0 46.8 1.0
O B:HOH486 3.7 56.0 1.0
OE1 A:GLU147 3.9 71.2 1.0
OE2 A:GLU32 3.9 48.3 1.0
OE2 B:GLU147 4.1 82.3 1.0
CG2 B:THR25 4.4 33.8 1.0
O B:THR25 4.4 38.7 1.0
CB B:ASP29 4.4 36.1 1.0
OE2 A:GLU147 4.5 72.2 1.0
CG A:GLU32 4.6 35.3 1.0
CB B:GLU147 4.6 39.1 1.0
CD A:GLU147 4.6 73.0 1.0
CD A:GLU32 4.7 46.6 1.0
CD B:GLU147 4.8 71.9 1.0
O B:HOH516 4.9 72.6 1.0
CA B:ASP29 4.9 33.6 1.0
CG B:GLU147 5.0 49.4 1.0

Magnesium binding site 4 out of 5 in 7rj1

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Magnesium binding site 4 out of 5 in the Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg302

b:83.6
occ:1.00
 OD2 C:ASP29 2.6 61.1 1.0
O C:HOH466 2.6 68.4 1.0
OE2 C:GLU147 2.6 77.9 1.0
O C:HOH497 2.6 72.6 1.0
OD1 C:ASP29 3.1 59.9 1.0
CG C:ASP29 3.2 62.3 1.0
O C:HOH470 3.7 53.1 1.0
CD C:GLU147 3.8 87.5 1.0
O C:HOH464 3.9 55.2 1.0
CG2 C:THR25 4.2 39.2 1.0
CG C:GLU147 4.4 57.2 1.0
CB C:GLU147 4.6 56.5 1.0
CB C:ASP29 4.7 49.7 1.0
OE1 C:GLU147 4.8 80.0 1.0
O C:THR25 4.8 44.7 1.0

Magnesium binding site 5 out of 5 in 7rj1

Go back to Magnesium Binding Sites List in 7rj1
Magnesium binding site 5 out of 5 in the Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of ARO7P Chorismate Mutase From Candida Albicans, Complex with L-Trp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg303

b:79.6
occ:1.00
 O C:HOH401 2.1 67.6 1.0
OE1 C:GLU147 2.8 80.0 1.0
O C:HOH464 3.3 55.2 1.0
CD C:GLU147 3.7 87.5 1.0
OE2 C:GLU147 3.7 77.9 1.0
O C:HOH466 3.9 68.4 1.0
OE2 C:GLU32 4.0 78.8 1.0
CG C:GLU32 4.3 61.2 1.0
CD C:GLU32 4.5 71.0 1.0

Reference:

P.J.Stogios, P.J.Stogios, E.Evdokimova, K.Tan, R.Di Leo, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). N/A N/A.
Page generated: Thu Oct 3 07:58:56 2024

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