Magnesium in PDB 7swl: Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase

The binding sites of Magnesium atom in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase (pdb code 7swl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase, PDB code: 7swl:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Magnesium binding site 1 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:30.0 occ:1.00 O1B A:ATP901 2.0 37.3 1.0 OG1 A:THR549 2.0 27.0 1.0 O2G A:ATP901 2.0 37.3 1.0 CB A:THR549 3.2 27.0 1.0 PB A:ATP901 3.3 37.3 1.0 PG A:ATP901 3.3 37.3 1.0 O3B A:ATP901 3.5 37.3 1.0 OD1 A:ASP601 3.7 28.7 1.0 N A:THR549 3.9 27.0 1.0 O1A A:ATP901 4.0 37.3 1.0 NE2 A:GLN602 4.0 32.1 1.0 O1G A:ATP901 4.0 37.3 1.0 OD2 A:ASP601 4.1 28.7 1.0 CA A:THR549 4.1 27.0 1.0 CG2 A:THR549 4.2 27.0 1.0 NH2 B:ARG659 4.2 37.3 1.0 O2B A:ATP901 4.2 37.3 1.0 O3A A:ATP901 4.3 37.3 1.0 CG A:ASP601 4.3 28.7 1.0 O3G A:ATP901 4.4 37.3 1.0 PA A:ATP901 4.6 37.3 1.0 O B:ASP630 4.7 31.9 1.0 CD A:GLN602 4.9 32.1 1.0 CB A:LYS548 5.0 37.3 1.0 C A:LYS548 5.0 37.3 1.0 O2A A:ATP901 5.0 37.3 1.0

Magnesium binding site 2 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg904 b:47.4 occ:1.00 O2G A:ATP902 2.0 39.4 1.0 O1B A:ATP902 2.0 39.4 1.0 OG1 A:THR250 2.1 40.1 1.0 CB A:THR250 3.3 40.1 1.0 PG A:ATP902 3.3 39.4 1.0 PB A:ATP902 3.3 39.4 1.0 O1A A:ATP902 3.5 39.4 1.0 O3B A:ATP902 3.5 39.4 1.0 OD1 A:ASP302 3.8 58.1 1.0 N A:THR250 3.9 40.1 1.0 O1G A:ATP902 4.0 39.4 1.0 O3A A:ATP902 4.1 39.4 1.0 CA A:THR250 4.2 40.1 1.0 OD2 A:ASP302 4.3 58.1 1.0 CG2 A:THR250 4.3 40.1 1.0 PA A:ATP902 4.3 39.4 1.0 O3G A:ATP902 4.5 39.4 1.0 CG A:ASP302 4.5 58.1 1.0 O2B A:ATP902 4.5 39.4 1.0 NH2 B:ARG362 4.6 37.3 1.0 NE2 A:GLN303 4.8 56.4 1.0 CB A:LYS249 4.9 38.1 1.0 O2A A:ATP902 5.0 39.4 1.0

Magnesium binding site 3 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg903 b:33.6 occ:1.00 O1B B:ATP901 2.0 37.3 1.0 O2G B:ATP901 2.1 37.3 1.0 OG1 B:THR549 2.1 37.3 1.0 PB B:ATP901 3.0 37.3 1.0 O1A B:ATP901 3.2 37.3 1.0 CB B:THR549 3.2 37.3 1.0 PG B:ATP901 3.3 37.3 1.0 O3A B:ATP901 3.4 37.3 1.0 O3B B:ATP901 3.5 37.3 1.0 PA B:ATP901 3.9 37.3 1.0 N B:THR549 3.9 37.3 1.0 NH2 C:ARG659 4.1 37.3 1.0 O1G B:ATP901 4.1 37.3 1.0 OD1 B:ASP601 4.1 33.4 1.0 CA B:THR549 4.2 37.3 1.0 CG2 B:THR549 4.2 37.3 1.0 OD2 B:ASP601 4.3 33.4 1.0 O2B B:ATP901 4.4 37.3 1.0 O3G B:ATP901 4.4 37.3 1.0 O C:ASP630 4.5 36.3 1.0 NE2 B:GLN602 4.5 37.3 1.0 NH2 C:ARG656 4.6 37.3 1.0 CG B:ASP601 4.7 33.4 1.0 O2A B:ATP901 4.8 37.3 1.0

Magnesium binding site 4 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg904 b:41.5 occ:1.00 OG1 B:THR250 2.0 37.3 1.0 O1B B:ATP902 2.0 35.8 1.0 O2G B:ATP902 2.0 35.8 1.0 CB B:THR250 3.2 37.3 1.0 PG B:ATP902 3.3 35.8 1.0 PB B:ATP902 3.3 35.8 1.0 O3B B:ATP902 3.4 35.8 1.0 O1A B:ATP902 3.5 35.8 1.0 OD1 B:ASP302 3.9 27.3 1.0 OD2 B:ASP302 3.9 27.3 1.0 O3G B:ATP902 4.0 35.8 1.0 N B:THR250 4.0 37.3 1.0 CA B:THR250 4.1 37.3 1.0 O3A B:ATP902 4.2 35.8 1.0 CG2 B:THR250 4.2 37.3 1.0 CG B:ASP302 4.3 27.3 1.0 NH2 C:ARG362 4.4 37.3 1.0 PA B:ATP902 4.4 35.8 1.0 O2B B:ATP902 4.4 35.8 1.0 O1G B:ATP902 4.5 35.8 1.0 OD2 C:ASP331 4.7 31.1 1.0 NE2 B:GLN303 4.9 27.7 1.0

Magnesium binding site 5 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg903 b:45.8 occ:1.00 O2G C:ATP901 2.0 37.3 1.0 O1B C:ATP901 2.0 37.3 1.0 OG1 C:THR549 2.0 37.3 1.0 CB C:THR549 3.1 37.3 1.0 PG C:ATP901 3.2 37.3 1.0 PB C:ATP901 3.2 37.3 1.0 O1A C:ATP901 3.5 37.3 1.0 O3B C:ATP901 3.5 37.3 1.0 OD1 C:ASP601 3.7 33.0 1.0 O1G C:ATP901 3.9 37.3 1.0 N C:THR549 3.9 37.3 1.0 O3A C:ATP901 3.9 37.3 1.0 OD2 C:ASP601 4.1 33.0 1.0 CA C:THR549 4.1 37.3 1.0 NH2 D:ARG659 4.1 37.3 1.0 CG2 C:THR549 4.1 37.3 1.0 NE2 C:GLN602 4.2 37.3 1.0 CG C:ASP601 4.3 33.0 1.0 PA C:ATP901 4.3 37.3 1.0 O D:ASP630 4.4 28.3 1.0 O3G C:ATP901 4.4 37.3 1.0 O2B C:ATP901 4.5 37.3 1.0 NH2 D:ARG656 5.0 37.3 1.0

Magnesium binding site 6 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg904 b:49.8 occ:1.00 O1B C:ATP902 2.0 37.3 1.0 O2G C:ATP902 2.0 37.3 1.0 OG1 C:THR250 2.0 37.3 1.0 CB C:THR250 3.2 37.3 1.0 PB C:ATP902 3.2 37.3 1.0 PG C:ATP902 3.3 37.3 1.0 O1A C:ATP902 3.4 37.3 1.0 O3B C:ATP902 3.5 37.3 1.0 OD2 C:ASP302 3.8 27.7 1.0 O3A C:ATP902 4.0 37.3 1.0 N C:THR250 4.0 37.3 1.0 OD1 C:ASP302 4.0 27.7 1.0 CA C:THR250 4.1 37.3 1.0 NE2 C:GLN303 4.1 26.9 0.5 O3G C:ATP902 4.2 37.3 1.0 CG2 C:THR250 4.2 37.3 1.0 NH2 D:ARG362 4.2 37.3 1.0 PA C:ATP902 4.2 37.3 1.0 CG C:ASP302 4.3 27.7 1.0 O1G C:ATP902 4.3 37.3 1.0 OD2 D:ASP331 4.4 35.0 1.0 O2B C:ATP902 4.4 37.3 1.0 NE2 C:GLN303 4.8 26.9 0.5 CD C:GLN303 5.0 26.9 0.5 O2A C:ATP902 5.0 37.3 1.0

Magnesium binding site 7 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg903 b:28.0 occ:1.00 O2G D:ATP901 2.0 30.1 1.0 O1B D:ATP901 2.0 30.1 1.0 OG1 D:THR549 2.0 28.7 1.0 CB D:THR549 3.2 28.7 1.0 O1A D:ATP901 3.2 30.1 1.0 PB D:ATP901 3.2 30.1 1.0 PG D:ATP901 3.2 30.1 1.0 O3B D:ATP901 3.5 30.1 1.0 O3A D:ATP901 3.9 30.1 1.0 O1G D:ATP901 3.9 30.1 1.0 N D:THR549 3.9 28.7 1.0 OD1 D:ASP601 4.0 28.4 1.0 PA D:ATP901 4.1 30.1 1.0 NE2 D:GLN602 4.1 29.1 1.0 CA D:THR549 4.1 28.7 1.0 CG2 D:THR549 4.2 28.7 1.0 NH2 E:ARG659 4.2 32.4 1.0 OD2 D:ASP601 4.3 28.4 1.0 OD2 E:ASP630 4.4 35.5 1.0 O3G D:ATP901 4.4 30.1 1.0 O2B D:ATP901 4.5 30.1 1.0 CG D:ASP601 4.6 28.4 1.0

Magnesium binding site 8 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg904 b:37.0 occ:1.00 O1B D:ATP902 2.0 18.4 1.0 OG1 D:THR250 2.0 27.9 1.0 O2G D:ATP902 2.0 18.4 1.0 CB D:THR250 3.1 27.9 1.0 O1A D:ATP902 3.1 18.4 1.0 PG D:ATP902 3.2 18.4 1.0 PB D:ATP902 3.2 18.4 1.0 O3B D:ATP902 3.5 18.4 1.0 O3G D:ATP902 3.7 18.4 1.0 OD2 E:ASP331 3.8 46.5 1.0 O3A D:ATP902 3.9 18.4 1.0 NH2 E:ARG362 4.0 32.4 1.0 N D:THR250 4.0 27.9 1.0 PA D:ATP902 4.0 18.4 1.0 CG2 D:THR250 4.1 27.9 1.0 CA D:THR250 4.1 27.9 1.0 OD2 D:ASP302 4.2 27.2 1.0 OD1 D:ASP302 4.2 27.2 1.0 NE2 D:GLN303 4.4 28.6 1.0 O2B D:ATP902 4.5 18.4 1.0 O1G D:ATP902 4.5 18.4 1.0 CG D:ASP302 4.6 27.2 1.0 O2A D:ATP902 4.8 18.4 1.0 CG E:ASP331 5.0 46.5 1.0

Magnesium binding site 9 out of 9 in the Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryoem Structure of the N-Terminal-Deleted RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg903 b:65.1 occ:1.00 OG1 E:THR250 2.0 62.9 1.0 O2G E:ATP902 2.1 76.9 1.0 O1B E:ATP902 2.1 76.9 1.0 PG E:ATP902 3.1 76.9 1.0 CB E:THR250 3.2 62.9 1.0 PB E:ATP902 3.3 76.9 1.0 O3B E:ATP902 3.4 76.9 1.0 O1A E:ATP902 3.4 76.9 1.0 O1G E:ATP902 3.5 76.9 1.0 OD2 E:ASP302 3.9 61.1 1.0 N E:THR250 3.9 62.9 1.0 O3A E:ATP902 4.0 76.9 1.0 CA E:THR250 4.1 62.9 1.0 OD1 E:ASP302 4.1 61.1 1.0 CG2 E:THR250 4.3 62.9 1.0 PA E:ATP902 4.3 76.9 1.0 CG E:ASP302 4.4 61.1 1.0 O3G E:ATP902 4.5 76.9 1.0 O2B E:ATP902 4.5 76.9 1.0 NE2 E:GLN303 4.7 65.8 1.0 C E:LYS249 5.0 63.9 1.0 O2A E:ATP902 5.0 76.9 1.0

S.Kocaman, R.E.Stanley, Y.H.Lo, J.Krahn, V.P.Dandey, M.Sobhany, M.Petrovich, J.G.Williams, L.J.Deterding, M.J.Borgnia, S.Etigunta. Cryoem Structure of the N-Terminal Deleted RIX7 To Be Published.