Magnesium in PDB 7tlt: Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02

The structure of Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02, PDB code: 7tlt was solved by L.D.Murdolo, C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.29 / 2.30
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	48.812, 64.467, 76.422, 106.53, 92.43, 97.51
R / Rfree (%)	19.2 / 23.8

The structure of Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02 also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Magnesium atom in the Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02 (pdb code 7tlt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02, PDB code: 7tlt:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:42.2 occ:1.00 N E:LEU4 3.3 35.4 1.0 ND2 A:ASN66 3.4 30.4 1.0 OH E:TYR1 3.5 51.4 1.0 CE2 E:TYR1 3.7 46.1 1.0 CA E:PRO3 3.8 32.8 1.0 CB E:LEU4 3.9 35.1 1.0 C E:PRO3 4.0 37.7 1.0 CZ E:TYR1 4.1 53.0 1.0 CB E:PRO3 4.2 34.8 1.0 CA E:LEU4 4.2 35.3 1.0 CG A:ASN66 4.2 42.7 1.0 NH2 A:ARG65 4.3 58.4 1.0 OD1 A:ASN66 4.3 34.2 1.0 OH A:TYR159 4.6 49.2 1.0 CE1 A:TYR159 4.8 42.7 1.0 CD2 E:TYR1 4.9 45.5 1.0 CZ A:TYR159 5.0 49.3 1.0

Magnesium binding site 2 out of 2 in the Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg103 b:71.6 occ:1.00 OG A:SER207 3.6 57.0 1.0 CD2 B:HIS13 3.6 49.5 1.0 NZ A:LYS186 3.6 99.5 1.0 CD B:PRO14 4.1 43.8 1.0 CG B:HIS13 4.4 46.7 1.0 CD A:LYS186 4.5 71.5 1.0 NE2 B:HIS13 4.5 49.7 1.0 CE A:LYS186 4.7 90.4 1.0 CB B:HIS13 4.7 42.5 1.0 CB A:SER207 4.8 46.2 1.0 CA B:HIS13 4.9 40.6 1.0 CG B:PRO14 5.0 47.4 1.0

L.D.Murdolo, C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S489-497 (Yfplqsygf) Presented By Hla-A*29:02 To Be Published.