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Magnesium in PDB 7uwe: Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex

Enzymatic activity of Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex

All present enzymatic activity of Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex:
2.7.7.6; 3.1.26.4;

Other elements in 7uwe:

The structure of Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex (pdb code 7uwe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex, PDB code: 7uwe:

Magnesium binding site 1 out of 1 in 7uwe

Go back to Magnesium Binding Sites List in 7uwe
Magnesium binding site 1 out of 1 in the Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of E. Coli Transcription-Coupled Ribonucleotide Excision Repair (Tc-Rer) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1501

b:13.1
occ:1.00
 OD1 J:ASP460 2.1 14.3 1.0
OD1 J:ASP462 2.1 10.9 1.0
OD2 J:ASP462 2.3 10.9 1.0
O3' R:A20 2.4 14.3 1.0
CG J:ASP462 2.5 10.9 1.0
OD1 J:ASP464 2.8 11.8 1.0
OD2 J:ASP464 3.0 11.8 1.0
CG J:ASP460 3.2 14.3 1.0
CG J:ASP464 3.2 11.8 1.0
OD2 J:ASP460 3.7 14.3 1.0
C3' R:A20 3.7 14.3 1.0
CB J:ASP462 4.0 10.9 1.0
C4' R:A20 4.2 14.3 1.0
N J:ASP460 4.3 14.3 1.0
O2' R:A20 4.4 14.3 1.0
NH2 J:ARG425 4.4 8.8 1.0
CB J:ASP460 4.5 14.3 1.0
N J:ASP462 4.5 10.9 1.0
O J:ASP460 4.6 14.3 1.0
C5' R:A20 4.6 14.3 1.0
C J:ASP460 4.6 14.3 1.0
C2' R:A20 4.7 14.3 1.0
CA J:ASP460 4.7 14.3 1.0
CB J:ASP464 4.7 11.8 1.0
CA J:ASP462 4.7 10.9 1.0

Reference:

Z.Hao, M.Gowder, S.Proshkin, B.K.Bharati, V.Epshtein, V.Svetlov, I.Shamovsky, E.Nudler. Rna Polymerase Drives Ribonucleotide Excision Dna Repair in E. Coli. Cell 2023.
ISSN: ISSN 1097-4172
PubMed: 37196657
DOI: 10.1016/J.CELL.2023.04.029
Page generated: Thu Oct 3 10:15:37 2024

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