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Magnesium in PDB 7uxa: Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg

Enzymatic activity of Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg

All present enzymatic activity of Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg:
4.6.1.16;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg (pdb code 7uxa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg, PDB code: 7uxa:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7uxa

Go back to Magnesium Binding Sites List in 7uxa
Magnesium binding site 1 out of 2 in the Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg101

b:31.2
occ:1.00
OP1 E:G9 2.1 54.1 1.0
P E:G9 3.4 70.8 1.0
O3' E:U8 3.7 59.0 1.0
OP2 E:G10 4.2 67.5 1.0
OP1 E:U8 4.3 42.2 1.0
C5' E:G9 4.3 60.2 1.0
O5' E:G9 4.3 56.0 1.0
OP2 E:G9 4.5 45.1 1.0
OP2 E:C11 4.7 48.6 1.0
C3' E:U8 4.9 40.2 1.0
C5' E:U8 5.0 48.0 1.0

Magnesium binding site 2 out of 2 in 7uxa

Go back to Magnesium Binding Sites List in 7uxa
Magnesium binding site 2 out of 2 in the Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg102

b:14.5
occ:1.00
OP2 E:G12 2.4 53.2 1.0
OP2 E:G9 3.3 45.1 1.0
P E:G12 3.8 59.1 1.0
OP2 E:U8 3.9 44.2 1.0
O5' E:G12 4.3 36.6 1.0
OP1 E:U8 4.4 42.2 1.0
OP2 E:C11 4.4 48.6 1.0
P E:G9 4.5 70.8 1.0
N7 E:G12 4.5 29.3 1.0
P E:U8 4.6 58.9 1.0
OP1 E:G12 4.7 55.6 1.0
O5' E:C11 4.7 62.2 1.0
C8 E:G12 4.7 31.9 1.0
OP1 E:G9 4.7 54.1 1.0
O3' E:C11 4.8 44.6 1.0
C3' E:C11 4.8 42.0 1.0
C5 E:C13 4.8 27.5 1.0
P E:C11 5.0 65.1 1.0

Reference:

R.E.Stanley, C.K.Hayne. Human Trna Splicing Endonuclease Complex Bound to Pre-Trna-Arg To Be Published.
Page generated: Thu Oct 3 10:16:02 2024

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