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Magnesium in PDB 7xwe: Rrgsgg-ATPRT6 Ubr Box

Enzymatic activity of Rrgsgg-ATPRT6 Ubr Box

All present enzymatic activity of Rrgsgg-ATPRT6 Ubr Box:
2.3.2.27;

Protein crystallography data

The structure of Rrgsgg-ATPRT6 Ubr Box, PDB code: 7xwe was solved by L.Kim, H.K.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.01 / 1.60
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.192, 55.859, 57.323, 90, 90, 90
R / Rfree (%) 17.7 / 20

Other elements in 7xwe:

The structure of Rrgsgg-ATPRT6 Ubr Box also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rrgsgg-ATPRT6 Ubr Box (pdb code 7xwe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rrgsgg-ATPRT6 Ubr Box, PDB code: 7xwe:

Magnesium binding site 1 out of 1 in 7xwe

Go back to Magnesium Binding Sites List in 7xwe
Magnesium binding site 1 out of 1 in the Rrgsgg-ATPRT6 Ubr Box


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rrgsgg-ATPRT6 Ubr Box within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:17.7
occ:1.00
OG A:SER157 2.0 18.3 1.0
O A:HOH619 2.1 16.6 1.0
O A:HOH618 2.1 19.8 1.0
HB3 A:SER157 3.1 20.6 1.0
CB A:SER157 3.1 17.1 1.0
HA A:SER157 3.6 20.5 1.0
HB2 A:SER157 3.8 20.6 1.0
CA A:SER157 3.9 17.1 1.0
N A:SER157 4.7 15.9 1.0
H A:SER157 4.8 19.1 1.0

Reference:

L.Kim, C.C.Lin, T.J.Lin, Y.C.Cao, M.C.Chen, M.Y.Chou, W.H.Lin, M.Kim, J.L.Wu, M.C.Shih, H.K.Song, M.C.Ho. Structural Analyses of Plant PRT6-Ubr Box For Cys-Arg/N-Degron Pathway and Insights Into the Plant Submergence Resistance To Be Published.
Page generated: Thu Oct 3 13:24:36 2024

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