Magnesium in PDB 7yca: Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
Enzymatic activity of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
All present enzymatic activity of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri:
1.97.1.12;
Other elements in 7yca:
The structure of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
240;
Page 25, Binding sites: 241 -
250;
Page 26, Binding sites: 251 -
260;
Page 27, Binding sites: 261 -
270;
Page 28, Binding sites: 271 -
280;
Page 29, Binding sites: 281 -
290;
Page 30, Binding sites: 291 -
300;
Page 31, Binding sites: 301 -
310;
Page 32, Binding sites: 311 -
315;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
(pdb code 7yca). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 315 binding sites of Magnesium where determined in the
Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri, PDB code: 7yca:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 1 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg601
b:76.6
occ:1.00
|
MG
|
1:CHL601
|
0.0
|
76.6
|
1.0
|
NB
|
1:CHL601
|
2.0
|
77.6
|
1.0
|
ND
|
1:CHL601
|
2.0
|
77.1
|
1.0
|
NC
|
1:CHL601
|
2.1
|
80.6
|
1.0
|
NA
|
1:CHL601
|
2.1
|
79.6
|
1.0
|
O
|
1:TRP34
|
2.1
|
77.8
|
1.0
|
C4D
|
1:CHL601
|
2.9
|
78.2
|
1.0
|
C
|
1:TRP34
|
3.0
|
76.9
|
1.0
|
C1B
|
1:CHL601
|
3.0
|
78.2
|
1.0
|
C4A
|
1:CHL601
|
3.0
|
78.6
|
1.0
|
C4B
|
1:CHL601
|
3.1
|
75.5
|
1.0
|
C1C
|
1:CHL601
|
3.1
|
76.2
|
1.0
|
C4C
|
1:CHL601
|
3.1
|
79.2
|
1.0
|
C1D
|
1:CHL601
|
3.1
|
79.0
|
1.0
|
C1A
|
1:CHL601
|
3.2
|
78.9
|
1.0
|
CHB
|
1:CHL601
|
3.4
|
77.7
|
1.0
|
CHC
|
1:CHL601
|
3.4
|
76.1
|
1.0
|
CHA
|
1:CHL601
|
3.5
|
77.3
|
1.0
|
CHD
|
1:CHL601
|
3.5
|
78.2
|
1.0
|
CA
|
1:TRP34
|
3.5
|
73.1
|
1.0
|
N
|
1:PHE35
|
4.0
|
80.5
|
1.0
|
CB
|
1:TRP34
|
4.2
|
73.3
|
1.0
|
C3D
|
1:CHL601
|
4.3
|
77.9
|
1.0
|
C2B
|
1:CHL601
|
4.3
|
77.3
|
1.0
|
CA
|
1:PHE35
|
4.3
|
75.7
|
1.0
|
C3B
|
1:CHL601
|
4.3
|
76.4
|
1.0
|
C2D
|
1:CHL601
|
4.3
|
78.0
|
1.0
|
C3C
|
1:CHL601
|
4.4
|
77.0
|
1.0
|
C2C
|
1:CHL601
|
4.4
|
75.1
|
1.0
|
C3A
|
1:CHL601
|
4.4
|
77.8
|
1.0
|
C2A
|
1:CHL601
|
4.5
|
76.9
|
1.0
|
O
|
1:MET33
|
4.5
|
80.0
|
1.0
|
CB
|
1:PHE35
|
4.7
|
76.3
|
1.0
|
N
|
1:TRP34
|
4.8
|
73.9
|
1.0
|
CBD
|
1:CHL601
|
5.0
|
76.6
|
1.0
|
|
Magnesium binding site 2 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 2 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg602
b:76.9
occ:1.00
|
MG
|
1:CLA602
|
0.0
|
76.9
|
1.0
|
ND
|
1:CLA602
|
2.0
|
71.7
|
1.0
|
NB
|
1:CLA602
|
2.0
|
70.6
|
1.0
|
NA
|
1:CLA602
|
2.1
|
73.9
|
1.0
|
NC
|
1:CLA602
|
2.1
|
73.7
|
1.0
|
OE2
|
1:GLU73
|
2.2
|
80.8
|
1.0
|
CD
|
1:GLU73
|
2.7
|
79.4
|
1.0
|
OE1
|
1:GLU73
|
2.7
|
77.5
|
1.0
|
C4D
|
1:CLA602
|
3.0
|
70.6
|
1.0
|
C1B
|
1:CLA602
|
3.0
|
71.2
|
1.0
|
C4A
|
1:CLA602
|
3.0
|
71.8
|
1.0
|
C4B
|
1:CLA602
|
3.1
|
70.4
|
1.0
|
C1C
|
1:CLA602
|
3.1
|
75.2
|
1.0
|
C1A
|
1:CLA602
|
3.2
|
73.1
|
1.0
|
C1D
|
1:CLA602
|
3.2
|
72.7
|
1.0
|
C4C
|
1:CLA602
|
3.2
|
71.0
|
1.0
|
CHB
|
1:CLA602
|
3.4
|
71.8
|
1.0
|
CHC
|
1:CLA602
|
3.5
|
72.6
|
1.0
|
C38
|
1:XAT612
|
3.5
|
73.1
|
1.0
|
CHA
|
1:CLA602
|
3.5
|
71.9
|
1.0
|
CHD
|
1:CLA602
|
3.6
|
72.4
|
1.0
|
NH1
|
1:ARG177
|
3.8
|
79.4
|
1.0
|
CG
|
1:GLU73
|
4.0
|
78.0
|
1.0
|
C2B
|
1:CLA602
|
4.3
|
72.9
|
1.0
|
C3D
|
1:CLA602
|
4.3
|
71.2
|
1.0
|
C3B
|
1:CLA602
|
4.3
|
71.8
|
1.0
|
CD
|
1:ARG177
|
4.3
|
79.7
|
1.0
|
C2D
|
1:CLA602
|
4.3
|
72.4
|
1.0
|
C3A
|
1:CLA602
|
4.4
|
73.6
|
1.0
|
C2C
|
1:CLA602
|
4.4
|
72.6
|
1.0
|
C3C
|
1:CLA602
|
4.4
|
70.6
|
1.0
|
C2A
|
1:CLA602
|
4.5
|
71.9
|
1.0
|
CB
|
1:GLU73
|
4.5
|
79.2
|
1.0
|
CZ
|
1:ARG177
|
4.7
|
79.4
|
1.0
|
C25
|
1:XAT612
|
4.9
|
73.6
|
1.0
|
CBD
|
1:CLA602
|
4.9
|
73.0
|
1.0
|
CMA
|
1:CLA602
|
5.0
|
73.7
|
1.0
|
NE
|
1:ARG177
|
5.0
|
78.2
|
1.0
|
|
Magnesium binding site 3 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 3 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg603
b:65.1
occ:1.00
|
MG
|
1:CLA603
|
0.0
|
65.1
|
1.0
|
NB
|
1:CLA603
|
2.0
|
64.3
|
1.0
|
ND
|
1:CLA603
|
2.0
|
65.7
|
1.0
|
NC
|
1:CLA603
|
2.1
|
64.0
|
1.0
|
NA
|
1:CLA603
|
2.1
|
63.5
|
1.0
|
NE2
|
1:HIS76
|
2.2
|
75.3
|
1.0
|
C4D
|
1:CLA603
|
2.9
|
65.7
|
1.0
|
CD2
|
1:HIS76
|
3.0
|
75.5
|
1.0
|
C1B
|
1:CLA603
|
3.0
|
66.0
|
1.0
|
C4A
|
1:CLA603
|
3.0
|
65.2
|
1.0
|
C1C
|
1:CLA603
|
3.1
|
65.2
|
1.0
|
C4B
|
1:CLA603
|
3.1
|
64.4
|
1.0
|
C4C
|
1:CLA603
|
3.1
|
65.0
|
1.0
|
C1D
|
1:CLA603
|
3.2
|
64.2
|
1.0
|
C1A
|
1:CLA603
|
3.2
|
64.9
|
1.0
|
CE1
|
1:HIS76
|
3.3
|
75.7
|
1.0
|
CHB
|
1:CLA603
|
3.4
|
66.2
|
1.0
|
CHC
|
1:CLA603
|
3.4
|
67.1
|
1.0
|
CHA
|
1:CLA603
|
3.5
|
66.9
|
1.0
|
CHD
|
1:CLA603
|
3.5
|
65.4
|
1.0
|
CG
|
1:HIS76
|
4.2
|
76.3
|
1.0
|
C3D
|
1:CLA603
|
4.2
|
62.7
|
1.0
|
C2B
|
1:CLA603
|
4.3
|
64.8
|
1.0
|
ND1
|
1:HIS76
|
4.3
|
78.1
|
1.0
|
C3B
|
1:CLA603
|
4.3
|
62.9
|
1.0
|
C3C
|
1:CLA603
|
4.3
|
68.1
|
1.0
|
C2C
|
1:CLA603
|
4.3
|
64.9
|
1.0
|
C2D
|
1:CLA603
|
4.4
|
64.4
|
1.0
|
C3A
|
1:CLA603
|
4.4
|
64.8
|
1.0
|
C2A
|
1:CLA603
|
4.5
|
64.5
|
1.0
|
CBD
|
1:CLA603
|
4.9
|
67.3
|
1.0
|
|
Magnesium binding site 4 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 4 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg604
b:80.3
occ:1.00
|
MG
|
1:CHL604
|
0.0
|
80.3
|
1.0
|
ND
|
1:CHL604
|
2.0
|
82.6
|
1.0
|
NB
|
1:CHL604
|
2.0
|
81.1
|
1.0
|
NA
|
1:CHL604
|
2.1
|
84.6
|
1.0
|
NC
|
1:CHL604
|
2.1
|
80.3
|
1.0
|
OE1
|
1:GLN102
|
2.2
|
93.9
|
1.0
|
CD
|
1:GLN102
|
2.6
|
92.0
|
1.0
|
C4D
|
1:CHL604
|
2.9
|
82.0
|
1.0
|
C4B
|
1:CHL604
|
3.0
|
83.9
|
1.0
|
C1B
|
1:CHL604
|
3.0
|
79.8
|
1.0
|
C4A
|
1:CHL604
|
3.1
|
82.7
|
1.0
|
C1C
|
1:CHL604
|
3.1
|
81.4
|
1.0
|
NE2
|
1:GLN102
|
3.1
|
91.0
|
1.0
|
C1D
|
1:CHL604
|
3.1
|
81.5
|
1.0
|
C1A
|
1:CHL604
|
3.2
|
85.0
|
1.0
|
C4C
|
1:CHL604
|
3.2
|
81.1
|
1.0
|
CHC
|
1:CHL604
|
3.4
|
83.1
|
1.0
|
CG
|
1:GLN102
|
3.4
|
91.0
|
1.0
|
CHB
|
1:CHL604
|
3.5
|
79.8
|
1.0
|
CHA
|
1:CHL604
|
3.5
|
81.6
|
1.0
|
CHD
|
1:CHL604
|
3.6
|
81.9
|
1.0
|
C3D
|
1:CHL604
|
4.2
|
83.0
|
1.0
|
C2B
|
1:CHL604
|
4.3
|
80.3
|
1.0
|
C3B
|
1:CHL604
|
4.3
|
81.6
|
1.0
|
C2D
|
1:CHL604
|
4.3
|
81.8
|
1.0
|
C2C
|
1:CHL604
|
4.4
|
82.2
|
1.0
|
C3C
|
1:CHL604
|
4.4
|
81.3
|
1.0
|
C3A
|
1:CHL604
|
4.4
|
83.0
|
1.0
|
C2A
|
1:CHL604
|
4.5
|
84.2
|
1.0
|
CB
|
1:GLN102
|
4.9
|
92.3
|
1.0
|
CBD
|
1:CHL604
|
4.9
|
82.6
|
1.0
|
|
Magnesium binding site 5 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 5 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg605
b:97.5
occ:1.00
|
MG
|
1:CLA605
|
0.0
|
97.5
|
1.0
|
NB
|
1:CLA605
|
2.0
|
96.8
|
1.0
|
ND
|
1:CLA605
|
2.0
|
98.4
|
1.0
|
NC
|
1:CLA605
|
2.1
|
98.3
|
1.0
|
NA
|
1:CLA605
|
2.1
|
97.1
|
1.0
|
C4D
|
1:CLA605
|
2.9
|
98.6
|
1.0
|
C1B
|
1:CLA605
|
3.0
|
95.8
|
1.0
|
C4B
|
1:CLA605
|
3.0
|
98.4
|
1.0
|
C4A
|
1:CLA605
|
3.1
|
98.6
|
1.0
|
C1C
|
1:CLA605
|
3.1
|
99.5
|
1.0
|
C4C
|
1:CLA605
|
3.2
|
97.5
|
1.0
|
C1D
|
1:CLA605
|
3.2
|
99.0
|
1.0
|
C1A
|
1:CLA605
|
3.2
|
96.3
|
1.0
|
CHC
|
1:CLA605
|
3.4
|
98.5
|
1.0
|
CHB
|
1:CLA605
|
3.4
|
97.3
|
1.0
|
CHA
|
1:CLA605
|
3.5
|
97.6
|
1.0
|
CHD
|
1:CLA605
|
3.5
|
98.4
|
1.0
|
C3D
|
1:CLA605
|
4.2
|
98.3
|
1.0
|
C2B
|
1:CLA605
|
4.2
|
97.8
|
1.0
|
C3B
|
1:CLA605
|
4.3
|
99.0
|
1.0
|
C2D
|
1:CLA605
|
4.3
|
96.2
|
1.0
|
C2C
|
1:CLA605
|
4.4
|
98.8
|
1.0
|
C3C
|
1:CLA605
|
4.4
|
97.8
|
1.0
|
C3A
|
1:CLA605
|
4.4
|
99.0
|
1.0
|
C2A
|
1:CLA605
|
4.5
|
97.2
|
1.0
|
CB
|
1:ALA135
|
4.5
|
90.2
|
1.0
|
O
|
1:ALA135
|
4.6
|
92.8
|
1.0
|
CBD
|
1:CLA605
|
4.9
|
98.8
|
1.0
|
|
Magnesium binding site 6 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 6 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg606
b:85.3
occ:1.00
|
MG
|
1:CLA606
|
0.0
|
85.3
|
1.0
|
NB
|
1:CLA606
|
2.0
|
86.0
|
1.0
|
ND
|
1:CLA606
|
2.0
|
80.4
|
1.0
|
NC
|
1:CLA606
|
2.1
|
81.3
|
1.0
|
NA
|
1:CLA606
|
2.1
|
83.0
|
1.0
|
OE2
|
1:GLU136
|
2.2
|
87.1
|
1.0
|
CD
|
1:GLU136
|
2.5
|
87.5
|
1.0
|
OE1
|
1:GLU136
|
2.8
|
88.8
|
1.0
|
C4D
|
1:CLA606
|
2.9
|
81.2
|
1.0
|
C1B
|
1:CLA606
|
3.0
|
82.9
|
1.0
|
C4B
|
1:CLA606
|
3.0
|
85.1
|
1.0
|
C4A
|
1:CLA606
|
3.1
|
82.2
|
1.0
|
C1C
|
1:CLA606
|
3.1
|
81.2
|
1.0
|
C4C
|
1:CLA606
|
3.2
|
81.9
|
1.0
|
C1A
|
1:CLA606
|
3.2
|
82.3
|
1.0
|
C1D
|
1:CLA606
|
3.2
|
79.1
|
1.0
|
CHC
|
1:CLA606
|
3.4
|
82.0
|
1.0
|
CHB
|
1:CLA606
|
3.4
|
82.0
|
1.0
|
CG
|
1:GLU136
|
3.5
|
87.5
|
1.0
|
CHA
|
1:CLA606
|
3.5
|
82.5
|
1.0
|
CHD
|
1:CLA606
|
3.5
|
82.4
|
1.0
|
NH2
|
1:ARG139
|
4.1
|
92.0
|
1.0
|
C3D
|
1:CLA606
|
4.3
|
80.2
|
1.0
|
C2B
|
1:CLA606
|
4.3
|
82.2
|
1.0
|
C3B
|
1:CLA606
|
4.3
|
83.5
|
1.0
|
CB
|
1:GLU136
|
4.3
|
88.4
|
1.0
|
C2C
|
1:CLA606
|
4.4
|
82.0
|
1.0
|
C3C
|
1:CLA606
|
4.4
|
79.6
|
1.0
|
C2D
|
1:CLA606
|
4.4
|
79.2
|
1.0
|
C3A
|
1:CLA606
|
4.4
|
83.2
|
1.0
|
C2A
|
1:CLA606
|
4.5
|
81.2
|
1.0
|
CMD
|
1:CLA603
|
4.5
|
67.4
|
1.0
|
OBD
|
1:CLA603
|
4.8
|
68.8
|
1.0
|
CBD
|
1:CLA606
|
4.9
|
81.9
|
1.0
|
|
Magnesium binding site 7 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 7 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg607
b:98.6
occ:1.00
|
MG
|
1:CLA607
|
0.0
|
98.6
|
1.0
|
NB
|
1:CLA607
|
2.0
|
97.0
|
1.0
|
ND
|
1:CLA607
|
2.0
|
94.6
|
1.0
|
NA
|
1:CLA607
|
2.1
|
96.8
|
1.0
|
NC
|
1:CLA607
|
2.1
|
95.1
|
1.0
|
OE2
|
1:GLU172
|
2.2
|
95.9
|
1.0
|
CD
|
1:GLU172
|
2.8
|
96.0
|
1.0
|
C4D
|
1:CLA607
|
3.0
|
94.6
|
1.0
|
C1B
|
1:CLA607
|
3.0
|
97.9
|
1.0
|
C4B
|
1:CLA607
|
3.0
|
96.3
|
1.0
|
C4A
|
1:CLA607
|
3.1
|
97.1
|
1.0
|
OE1
|
1:GLU172
|
3.1
|
98.4
|
1.0
|
C1C
|
1:CLA607
|
3.1
|
95.7
|
1.0
|
C4C
|
1:CLA607
|
3.1
|
96.8
|
1.0
|
C1A
|
1:CLA607
|
3.1
|
95.6
|
1.0
|
C1D
|
1:CLA607
|
3.1
|
97.2
|
1.0
|
CHB
|
1:CLA607
|
3.4
|
97.7
|
1.0
|
CHC
|
1:CLA607
|
3.4
|
96.7
|
1.0
|
CHD
|
1:CLA607
|
3.5
|
98.0
|
1.0
|
CHA
|
1:CLA607
|
3.5
|
94.6
|
1.0
|
CG
|
1:GLU172
|
3.9
|
92.2
|
1.0
|
C2B
|
1:CLA607
|
4.2
|
96.9
|
1.0
|
C3B
|
1:CLA607
|
4.2
|
95.5
|
1.0
|
C3D
|
1:CLA607
|
4.3
|
96.3
|
1.0
|
C2C
|
1:CLA607
|
4.4
|
95.6
|
1.0
|
C3C
|
1:CLA607
|
4.4
|
95.9
|
1.0
|
C2D
|
1:CLA607
|
4.4
|
98.5
|
1.0
|
C3A
|
1:CLA607
|
4.4
|
96.1
|
1.0
|
C2A
|
1:CLA607
|
4.4
|
96.5
|
1.0
|
C01
|
1:IWJ611
|
4.6
|
80.0
|
1.0
|
CB
|
1:GLU172
|
4.6
|
94.7
|
1.0
|
C02
|
1:IWJ611
|
5.0
|
83.0
|
1.0
|
CBD
|
1:CLA607
|
5.0
|
95.5
|
1.0
|
|
Magnesium binding site 8 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 8 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg608
b:77.8
occ:1.00
|
MG
|
1:CLA608
|
0.0
|
77.8
|
1.0
|
NB
|
1:CLA608
|
2.0
|
73.1
|
1.0
|
ND
|
1:CLA608
|
2.0
|
74.8
|
1.0
|
NA
|
1:CLA608
|
2.1
|
77.8
|
1.0
|
NC
|
1:CLA608
|
2.1
|
75.2
|
1.0
|
OE1
|
1:GLN189
|
2.2
|
83.1
|
1.0
|
C4D
|
1:CLA608
|
2.9
|
73.9
|
1.0
|
C1B
|
1:CLA608
|
3.0
|
75.4
|
1.0
|
C4B
|
1:CLA608
|
3.0
|
75.7
|
1.0
|
C4A
|
1:CLA608
|
3.1
|
75.2
|
1.0
|
C1C
|
1:CLA608
|
3.1
|
74.8
|
1.0
|
C1D
|
1:CLA608
|
3.1
|
73.3
|
1.0
|
C1A
|
1:CLA608
|
3.2
|
74.9
|
1.0
|
C4C
|
1:CLA608
|
3.2
|
75.8
|
1.0
|
CD
|
1:GLN189
|
3.2
|
80.6
|
1.0
|
CHC
|
1:CLA608
|
3.4
|
75.8
|
1.0
|
CHB
|
1:CLA608
|
3.4
|
74.6
|
1.0
|
CHA
|
1:CLA608
|
3.5
|
73.3
|
1.0
|
CHD
|
1:CLA608
|
3.5
|
74.3
|
1.0
|
CG
|
1:GLN189
|
3.7
|
80.7
|
1.0
|
C1
|
1:CLA608
|
4.2
|
77.8
|
1.0
|
C3D
|
1:CLA608
|
4.2
|
72.9
|
1.0
|
C2B
|
1:CLA608
|
4.3
|
78.3
|
1.0
|
C3B
|
1:CLA608
|
4.3
|
76.4
|
1.0
|
C2D
|
1:CLA608
|
4.3
|
71.4
|
1.0
|
C2
|
1:CLA608
|
4.3
|
76.6
|
1.0
|
NE2
|
1:GLN189
|
4.3
|
80.7
|
1.0
|
C2C
|
1:CLA608
|
4.4
|
76.9
|
1.0
|
C3C
|
1:CLA608
|
4.4
|
77.1
|
1.0
|
C3A
|
1:CLA608
|
4.4
|
76.3
|
1.0
|
O1A
|
1:CLA608
|
4.5
|
79.7
|
1.0
|
C2A
|
1:CLA608
|
4.5
|
77.5
|
1.0
|
O
|
1:GLY185
|
4.6
|
83.7
|
1.0
|
CA
|
1:GLY185
|
4.7
|
79.9
|
1.0
|
CGA
|
1:CLA608
|
4.7
|
79.4
|
1.0
|
C3
|
1:CLA608
|
4.8
|
75.9
|
1.0
|
CBD
|
1:CLA608
|
4.9
|
76.0
|
1.0
|
C
|
1:GLY185
|
4.9
|
83.1
|
1.0
|
|
Magnesium binding site 9 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 9 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg609
b:85.2
occ:1.00
|
MG
|
1:CLA609
|
0.0
|
85.2
|
1.0
|
NB
|
1:CLA609
|
2.0
|
75.4
|
1.0
|
ND
|
1:CLA609
|
2.0
|
78.6
|
1.0
|
NA
|
1:CLA609
|
2.1
|
81.3
|
1.0
|
NC
|
1:CLA609
|
2.1
|
80.9
|
1.0
|
NE2
|
1:HIS206
|
2.2
|
83.0
|
1.0
|
CD2
|
1:HIS206
|
2.8
|
83.8
|
1.0
|
C4D
|
1:CLA609
|
3.0
|
77.9
|
1.0
|
C1B
|
1:CLA609
|
3.0
|
75.0
|
1.0
|
C4A
|
1:CLA609
|
3.0
|
80.4
|
1.0
|
C4B
|
1:CLA609
|
3.1
|
77.3
|
1.0
|
C1C
|
1:CLA609
|
3.1
|
78.4
|
1.0
|
C4C
|
1:CLA609
|
3.1
|
78.0
|
1.0
|
C1D
|
1:CLA609
|
3.1
|
78.3
|
1.0
|
C1A
|
1:CLA609
|
3.2
|
79.1
|
1.0
|
CE1
|
1:HIS206
|
3.4
|
84.1
|
1.0
|
CHB
|
1:CLA609
|
3.4
|
77.9
|
1.0
|
CHC
|
1:CLA609
|
3.5
|
80.0
|
1.0
|
CHD
|
1:CLA609
|
3.5
|
77.7
|
1.0
|
CHA
|
1:CLA609
|
3.5
|
78.2
|
1.0
|
CG
|
1:HIS206
|
4.1
|
85.2
|
1.0
|
C20
|
1:CLA608
|
4.2
|
73.3
|
1.0
|
C3D
|
1:CLA609
|
4.3
|
77.5
|
1.0
|
C2B
|
1:CLA609
|
4.3
|
79.3
|
1.0
|
C3B
|
1:CLA609
|
4.3
|
79.7
|
1.0
|
ND1
|
1:HIS206
|
4.3
|
84.6
|
1.0
|
C2D
|
1:CLA609
|
4.4
|
78.4
|
1.0
|
C3C
|
1:CLA609
|
4.4
|
77.5
|
1.0
|
C2C
|
1:CLA609
|
4.4
|
76.5
|
1.0
|
C3A
|
1:CLA609
|
4.4
|
79.5
|
1.0
|
C2A
|
1:CLA609
|
4.5
|
77.8
|
1.0
|
CB
|
1:PRO210
|
4.7
|
83.0
|
1.0
|
CBD
|
1:CLA609
|
5.0
|
77.8
|
1.0
|
|
Magnesium binding site 10 out
of 315 in 7yca
Go back to
Magnesium Binding Sites List in 7yca
Magnesium binding site 10 out
of 315 in the Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of the Psi-Lhci-Lhcp Supercomplex From Ostreococcus Tauri within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg610
b:71.8
occ:1.00
|
MG
|
1:CLA610
|
0.0
|
71.8
|
1.0
|
NB
|
1:CLA610
|
2.0
|
72.0
|
1.0
|
ND
|
1:CLA610
|
2.0
|
70.0
|
1.0
|
NA
|
1:CLA610
|
2.1
|
74.2
|
1.0
|
NC
|
1:CLA610
|
2.1
|
74.3
|
1.0
|
O
|
1:ALA221
|
2.2
|
71.1
|
1.0
|
C4D
|
1:CLA610
|
2.9
|
70.6
|
1.0
|
C1B
|
1:CLA610
|
3.0
|
71.0
|
1.0
|
C4B
|
1:CLA610
|
3.1
|
71.5
|
1.0
|
C4A
|
1:CLA610
|
3.1
|
71.0
|
1.0
|
C1C
|
1:CLA610
|
3.1
|
69.8
|
1.0
|
C1D
|
1:CLA610
|
3.1
|
72.7
|
1.0
|
C4C
|
1:CLA610
|
3.1
|
72.8
|
1.0
|
C1A
|
1:CLA610
|
3.2
|
73.1
|
1.0
|
C
|
1:ALA221
|
3.4
|
70.7
|
1.0
|
CHB
|
1:CLA610
|
3.4
|
71.7
|
1.0
|
CHA
|
1:CLA610
|
3.4
|
73.1
|
1.0
|
CHC
|
1:CLA610
|
3.4
|
68.2
|
1.0
|
CHD
|
1:CLA610
|
3.5
|
72.5
|
1.0
|
CA
|
1:ILE222
|
3.9
|
78.9
|
1.0
|
N
|
1:ILE222
|
4.1
|
74.1
|
1.0
|
CG2
|
1:ILE222
|
4.2
|
76.1
|
1.0
|
C3D
|
1:CLA610
|
4.2
|
71.3
|
1.0
|
C2B
|
1:CLA610
|
4.3
|
70.6
|
1.0
|
C3B
|
1:CLA610
|
4.3
|
71.8
|
1.0
|
C2D
|
1:CLA610
|
4.3
|
71.2
|
1.0
|
C2C
|
1:CLA610
|
4.4
|
72.1
|
1.0
|
C3C
|
1:CLA610
|
4.4
|
72.8
|
1.0
|
C3A
|
1:CLA610
|
4.4
|
68.9
|
1.0
|
C2A
|
1:CLA610
|
4.5
|
68.7
|
1.0
|
CB
|
1:ILE222
|
4.5
|
76.8
|
1.0
|
CA
|
1:ALA221
|
4.5
|
71.4
|
1.0
|
CD
|
1:PRO223
|
4.7
|
75.1
|
1.0
|
CBD
|
1:CLA610
|
4.9
|
70.9
|
1.0
|
|
Reference:
A.Ishii,
J.Shan,
X.Sheng,
E.Kim,
A.Watanabe,
M.Yokono,
C.Noda,
C.Song,
K.Murata,
Z.Liu,
J.Minagawa.
The Photosystem I Supercomplex From A Primordial Green Alga Ostreococcus Tauri Harbors Three Light-Harvesting Complex Trimers. Elife V. 12 2023.
ISSN: ESSN 2050-084X
PubMed: 36951548
DOI: 10.7554/ELIFE.84488
Page generated: Thu Oct 3 14:38:24 2024
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