Magnesium in PDB 7yo1: Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex

The structure of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex also contains other interesting chemical elements:

Calcium

(Ca)

8 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex (pdb code 7yo1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex, PDB code: 7yo1:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:23.2 occ:1.00 OE2 A:GLU374 2.6 38.5 1.0 OE2 A:GLU399 2.9 33.5 1.0 CD A:GLU374 3.6 38.5 1.0 O A:THR396 3.7 24.6 1.0 CD A:GLU399 3.8 33.5 1.0 CG A:GLU399 4.1 33.5 1.0 C A:THR396 4.1 24.6 1.0 OE1 A:GLU374 4.3 38.5 1.0 CA A:THR396 4.4 24.6 1.0 CG A:GLU374 4.5 38.5 1.0 O A:PHE395 4.6 24.3 1.0 ND2 G:ASN172 4.6 39.0 1.0 OG1 A:THR396 4.8 24.6 1.0 OE1 A:GLU399 4.8 33.5 1.0 NH1 A:ARG342 4.9 44.8 1.0 N A:GLN397 4.9 25.2 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1101 b:28.6 occ:1.00 OE1 C:GLU374 3.0 30.7 1.0 CD C:GLU374 3.5 30.7 1.0 OE2 C:GLU374 3.6 30.7 1.0 OE1 C:GLU399 3.6 41.0 1.0 CD C:GLU399 4.3 41.0 1.0 O C:THR396 4.3 30.0 1.0 O C:PHE395 4.5 28.1 1.0 C C:THR396 4.6 30.0 1.0 CG C:GLU374 4.6 30.7 1.0 ND2 A:ASN172 4.6 34.9 1.0 OE2 C:GLU399 4.8 41.0 1.0 CA C:THR396 4.9 30.0 1.0 CB C:GLU399 5.0 41.0 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1101 b:25.1 occ:1.00 OE2 E:GLU374 2.7 32.1 1.0 OE2 E:GLU399 3.3 36.1 1.0 CD E:GLU374 3.9 32.1 1.0 CD E:GLU399 4.2 36.1 1.0 O E:THR396 4.2 23.5 1.0 CG E:GLU399 4.3 36.1 1.0 ND2 C:ASN172 4.4 40.0 1.0 OE1 E:GLU374 4.5 32.1 1.0 C E:THR396 4.6 23.5 1.0 O E:PHE395 4.7 24.6 1.0 CA E:THR396 4.7 23.5 1.0 OD1 C:ASN172 4.8 40.0 1.0 OG1 E:THR396 5.0 23.5 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1101 b:25.3 occ:1.00 OE2 G:GLU374 2.5 25.9 1.0 OE2 G:GLU399 2.7 36.2 1.0 CD G:GLU399 3.5 36.2 1.0 CG G:GLU399 3.6 36.2 1.0 CD G:GLU374 3.7 25.9 1.0 O G:THR396 4.1 22.7 1.0 OE1 G:GLU374 4.3 25.9 1.0 O G:PHE395 4.3 22.6 1.0 C G:THR396 4.4 22.7 1.0 CA G:THR396 4.5 22.7 1.0 ND2 E:ASN172 4.6 40.5 1.0 OE1 G:GLU399 4.7 36.2 1.0 CG G:GLU374 4.8 25.9 1.0

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.