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Magnesium in PDB 7ypa: Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin)

Enzymatic activity of Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin)

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin):
2.7.7.6;

Other elements in 7ypa:

The structure of Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin) (pdb code 7ypa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin), PDB code: 7ypa:

Magnesium binding site 1 out of 1 in 7ypa

Go back to Magnesium Binding Sites List in 7ypa
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1503

b:24.4
occ:1.00
OD1 D:ASP464 2.2 23.4 1.0
OD1 D:ASP462 2.2 19.3 1.0
OD1 D:ASP460 2.5 19.0 1.0
CG D:ASP464 2.9 23.4 1.0
OD2 D:ASP464 2.9 23.4 1.0
CG D:ASP462 3.0 19.3 1.0
OD2 D:ASP462 3.2 19.3 1.0
CG D:ASP460 3.4 19.0 1.0
OD2 D:ASP460 3.6 19.0 1.0
C5' H:U0 3.9 43.6 1.0
O3' H:U0 4.0 43.6 1.0
OP1 H:U0 4.1 43.6 1.0
NH2 D:ARG425 4.3 32.2 1.0
CB D:ASP464 4.4 23.4 1.0
O5' H:U0 4.4 43.6 1.0
CB D:ASP462 4.5 19.3 1.0
C4' H:U0 4.6 43.6 1.0
N D:ASP462 4.6 19.3 1.0
C3' H:U0 4.7 43.6 1.0
N D:ASP460 4.7 19.0 1.0
N D:ASP464 4.7 23.4 1.0
O D:ASP460 4.7 19.0 1.0
CB D:ASP460 4.7 19.0 1.0
C D:ASP460 4.9 19.0 1.0
C D:ASP462 4.9 19.3 1.0
CA D:ASP462 4.9 19.3 1.0
CA D:ASP464 4.9 23.4 1.0
P H:U0 5.0 43.6 1.0

Reference:

L.L.You, Y.Zhang. Cryo-Em Structure of Escherichia Coli Hairpin-Nucleation Complex of Transcription Termination (Ttc-Hairpin) To Be Published.
Page generated: Thu Aug 14 20:43:09 2025

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