Magnesium in PDB 7zdl: If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8)

The structure of If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8) also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Magnesium atom in the If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8) (pdb code 7zdl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8), PDB code: 7zdl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:55.4 occ:1.00 OG C:SER380 2.2 52.2 1.0 O2B C:ANP603 2.2 57.9 1.0 O1G C:ANP603 2.2 57.9 1.0 OE1 C:GLN421 2.2 49.0 1.0 CB C:SER380 2.8 52.2 1.0 OE1 C:GLU500 3.2 58.5 1.0 CD C:GLN421 3.3 49.0 1.0 PB C:ANP603 3.4 57.9 1.0 PG C:ANP603 3.5 57.9 1.0 N3B C:ANP603 3.6 57.9 1.0 OD1 C:ASP499 3.7 53.9 1.0 OD2 C:ASP499 3.8 53.9 1.0 NE2 C:GLN421 4.0 49.0 1.0 CD C:GLU500 4.0 58.5 1.0 CA C:SER380 4.1 52.2 1.0 CG C:ASP499 4.2 53.9 1.0 OE2 C:GLU500 4.3 58.5 1.0 O3A C:ANP603 4.3 57.9 1.0 N C:SER380 4.4 52.2 1.0 O2G C:ANP603 4.4 57.9 1.0 O3G C:ANP603 4.4 57.9 1.0 CG C:GLN421 4.4 49.0 1.0 NZ C:LYS379 4.5 56.9 1.0 CB C:GLN421 4.5 49.0 1.0 O1B C:ANP603 4.6 57.9 1.0 O2A C:ANP603 4.7 57.9 1.0

Magnesium binding site 2 out of 2 in the If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp- Pnp(Cydd) Bound State (Dataset-8) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:69.5 occ:1.00 O1B D:ANP602 2.2 73.8 1.0 OE1 D:GLN430 2.2 56.6 1.0 O3G D:ANP602 2.2 73.8 1.0 NE2 D:GLN430 2.7 56.6 1.0 CB D:SER390 2.7 62.0 1.0 CD D:GLN430 2.8 56.6 1.0 PB D:ANP602 2.8 73.8 1.0 PG D:ANP602 3.0 73.8 1.0 O1G D:ANP602 3.0 73.8 1.0 O2B D:ANP602 3.1 73.8 1.0 OG D:SER390 3.1 62.0 1.0 N3B D:ANP602 3.4 73.8 1.0 CA D:SER390 4.0 62.0 1.0 OD1 D:ASP510 4.1 56.2 1.0 CG D:GLN430 4.2 56.6 1.0 O3A D:ANP602 4.3 73.8 1.0 O2G D:ANP602 4.4 73.8 1.0 N D:SER390 4.5 62.0 1.0 OE1 D:GLU511 4.6 58.2 1.0 OD2 D:ASP510 4.8 56.2 1.0 CG D:ASP510 4.8 56.2 1.0 CE D:LYS389 4.9 67.4 1.0 O2A D:ANP602 5.0 73.8 1.0

D.Wu, S.Safarian. If(Heme/Coordinated) Conformation of Cyddc in Amp-Pnp(Cydc)/Amp-Pnp(Cydd) Bound State (Dataset-8) To Be Published.