Magnesium in PDB 8a9y: Substrate-Free Levan Utilisation Machinery (Utilisome)

The binding sites of Magnesium atom in the Substrate-Free Levan Utilisation Machinery (Utilisome) (pdb code 8a9y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Substrate-Free Levan Utilisation Machinery (Utilisome), PDB code: 8a9y:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Substrate-Free Levan Utilisation Machinery (Utilisome)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Substrate-Free Levan Utilisation Machinery (Utilisome) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:116.7 occ:1.00 OD2 A:ASP848 2.1 117.8 1.0 OD1 A:ASN841 2.1 119.4 1.0 OD1 A:ASP837 2.1 118.1 1.0 O A:VAL843 2.2 116.4 1.0 OD1 A:ASP839 2.4 121.2 1.0 OD1 A:ASP848 2.7 117.8 1.0 CG A:ASP848 2.7 117.8 1.0 CG A:ASN841 2.8 119.4 1.0 ND2 A:ASN841 2.8 119.4 1.0 CG A:ASP837 3.2 118.1 1.0 CG A:ASP839 3.3 121.2 1.0 OD1 A:ASP845 3.4 120.6 1.0 OD2 A:ASP839 3.4 121.2 1.0 C A:VAL843 3.4 116.4 1.0 OD2 A:ASP837 3.6 118.1 1.0 CB A:ASP848 4.2 117.8 1.0 CB A:ASN841 4.2 119.4 1.0 N A:VAL843 4.3 116.4 1.0 CA A:ILE844 4.3 116.5 1.0 N A:ILE844 4.3 116.5 1.0 CG A:ASP845 4.4 120.6 1.0 N A:ASN841 4.4 119.4 1.0 CA A:VAL843 4.4 116.4 1.0 CG1 A:VAL843 4.4 116.4 1.0 CB A:ASP837 4.5 118.1 1.0 N A:ASP845 4.6 120.6 1.0 N A:ASP839 4.7 121.2 1.0 CA A:ASP837 4.7 118.1 1.0 CB A:ASP839 4.7 121.2 1.0 CD1 A:ILE844 4.7 116.5 1.0 CA A:ASN841 4.8 119.4 1.0 OD2 A:ASP845 4.8 120.6 1.0 N A:ILE838 4.8 118.5 1.0 N A:HIS840 4.9 121.1 1.0 C A:ILE844 4.9 116.5 1.0 N A:GLY842 4.9 118.2 1.0

Magnesium binding site 2 out of 2 in the Substrate-Free Levan Utilisation Machinery (Utilisome)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Substrate-Free Levan Utilisation Machinery (Utilisome) within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1101 b:116.7 occ:1.00 OD2 I:ASP848 2.1 117.8 1.0 OD1 I:ASN841 2.1 119.4 1.0 OD1 I:ASP837 2.1 118.1 1.0 O I:VAL843 2.2 116.4 1.0 OD1 I:ASP839 2.4 121.2 1.0 OD1 I:ASP848 2.7 117.8 1.0 CG I:ASP848 2.7 117.8 1.0 CG I:ASN841 2.8 119.4 1.0 ND2 I:ASN841 2.8 119.4 1.0 CG I:ASP837 3.2 118.1 1.0 CG I:ASP839 3.3 121.2 1.0 OD1 I:ASP845 3.4 120.6 1.0 OD2 I:ASP839 3.4 121.2 1.0 C I:VAL843 3.4 116.4 1.0 OD2 I:ASP837 3.6 118.1 1.0 CB I:ASP848 4.2 117.8 1.0 CB I:ASN841 4.2 119.4 1.0 N I:VAL843 4.3 116.4 1.0 CA I:ILE844 4.3 116.5 1.0 N I:ILE844 4.3 116.5 1.0 CG I:ASP845 4.4 120.6 1.0 N I:ASN841 4.4 119.4 1.0 CA I:VAL843 4.4 116.4 1.0 CG1 I:VAL843 4.4 116.4 1.0 CB I:ASP837 4.5 118.1 1.0 N I:ASP845 4.6 120.6 1.0 N I:ASP839 4.7 121.2 1.0 CA I:ASP837 4.7 118.1 1.0 CB I:ASP839 4.7 121.2 1.0 CD1 I:ILE844 4.7 116.5 1.0 CA I:ASN841 4.8 119.4 1.0 OD2 I:ASP845 4.8 120.6 1.0 N I:ILE838 4.8 118.5 1.0 N I:HIS840 4.9 121.1 1.0 C I:ILE844 4.9 116.5 1.0 N I:GLY842 4.9 118.2 1.0

J.B.R.White, A.Silale, M.Feasy, T.Heunis, Y.Zhu, H.Zheng, A.Gajbhiye, S.Firbank, A.Basle, M.Trost, D.N.Bolam, B.Van Den Berg, N.A.Ranson. Outer Membrane Utilisomes Mediate Glycan Uptake in Gut Bacteroidetes Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06146-W